RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SNX22Q96L94 193 aa13.12□□□□□ -0.31
CCDC28A-201ENST00000332797 CHST6Q9GZX3 395 aa13.12□□□□□ -0.31
CCDC28A-201ENST00000332797 ZNF696Q9H7X3 374 aa13.12□□□□□ -0.31
CCDC28A-201ENST00000332797 SEBOXQ9HB31 216 aaPredicted RBP13.12□□□□□ -0.31
CCDC28A-201ENST00000332797 TRBV23-1A0A0A0MS06 115 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 PDCD1Q15116 288 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 GRK1Q15835 563 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 PIGYQ3MUY2 71 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 METTL11BQ5VVY1 283 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 GLT8D1Q68CQ7 371 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 C17orf107Q6ZR85 190 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 GDPD3Q7L5L3 318 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 LYPD6Q86Y78 171 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 OSR2Q8N2R0 312 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 OR4M1Q8NGD0 313 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 FOXRED1Q96CU9 486 aaPredicted RBP13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 UQCC2Q9BRT2 126 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 PCGF1Q9BSM1 259 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 VCX3AQ9NNX9 186 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 C19orf12Q9NSK7 152 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 MXRA5Q9NR99 2828 aa13.11□□□□□ -0.31
CCDC28A-201ENST00000332797 TRDV1A0A1B0GX56 115 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 A0A1W2PP11 408 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 DEGS1O15121 323 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 PSPNO60542 156 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 ZNF780AO75290 641 aaPredicted RBP13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 TOX4O94842 621 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 EDDM3BP56851 147 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 RPL31P62899 125 aaKnown RBP13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 EDDM3AQ14507 147 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 SYT6Q5T7P8 510 aaPredicted RBP13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 Q6P435 159 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 CD200R1LQ6Q8B3 271 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 OR8H2Q8N162 312 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 Q8NFD4 153 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 OR51T1Q8NGJ9 327 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 OR5D13Q8NGL4 314 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 UPRTQ96BW1 309 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 PCDHB16Q9NRJ7 776 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 TRAV40A0A0B4J280 105 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 FSHBP01225 129 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 OR3A1P47881 315 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 RBM11P57052 281 aaKnown RBP13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 GPR176Q14439 515 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 IL13RA2Q14627 380 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 C22orf42Q6IC83 251 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 CMTM4Q8IZR5 234 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 KIR3DL3Q8N743 410 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 CHST4Q8NCG5 386 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 OR4S1Q8NGB4 309 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 PPP1R35Q8TAP8 253 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 TBC1D15Q8TC07 691 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 POM121Q96HA1 1249 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 WDFY2Q96P53 400 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 SIRPDQ9H106 197 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 STUB1Q9UNE7 303 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 ST3GAL6Q9Y274 331 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 AK6Q9Y3D8 172 aaKnown RBP13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 KPTNQ9Y664 436 aa13.1□□□□□ -0.31
CCDC28A-201ENST00000332797 IGHV3OR16-10A0A075B7F0 116 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 A0A0G2JK05 382 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 SLC33A1O00400 549 aaPredicted RBP13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 GTF2F2P13984 249 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 MMP9P14780 707 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 GALP22466 123 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 MYL9P24844 172 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 KLF17Q5JT82 389 aaPredicted RBP13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 DMRTB1Q96MA1 342 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 C1orf147Q96MC9 270 aaPredicted RBP13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 TBX15Q96SF7 602 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 GFI1Q99684 422 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 PPA2Q9H2U2 334 aa13.09□□□□□ -0.31
CCDC28A-201ENST00000332797 MEX3AA1L020 520 aaKnown RBP13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 HSPB6O14558 160 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 MGST3O14880 152 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 GEMIN2O14893 280 aaKnown RBP13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 CRTAPO75718 401 aaPredicted RBP13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 IGHV4-38-2P0DP08 117 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 EPHA1P21709 976 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 LMO1P25800 156 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 HTR2CP28335 458 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 SCGB2A2Q13296 93 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 NHLRC3Q5JS37 347 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 C1orf100Q5SVJ3 147 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 TMEM200BQ69YZ2 307 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 VMO1Q7Z5L0 202 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 TPRX1Q8N7U7 411 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 FAM46BQ96A09 425 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 OR51E2Q9H255 320 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 BANF2Q9H503 90 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 PLGRKTQ9HBL7 147 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 ING3Q9NXR8 418 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 NUP50Q9UKX7 468 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 SSR3Q9UNL2 185 aa13.08□□□□□ -0.32
CCDC28A-201ENST00000332797 NAV3Q8IVL0 2385 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 A0A1W2PPH5 198 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 OR7C1O76099 320 aaPredicted RBP13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 UBBP0CG47 229 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 MGMTP16455 207 aa13.07□□□□□ -0.32
CCDC28A-201ENST00000332797 CD36P16671 472 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms