RNA–Protein interactions for RNA: ENST00000330188.13

TPM3-206, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,108 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-206ENST00000330188 HS3ST6Q96QI5 342 aa12.52□□□□□ -0.41
TPM3-206ENST00000330188 SUCNR1Q9BXA5 334 aa12.52□□□□□ -0.41
TPM3-206ENST00000330188 ACTL6AO96019 429 aa12.51□□□□□ -0.41
TPM3-206ENST00000330188 AADACP22760 399 aa12.51□□□□□ -0.41
TPM3-206ENST00000330188 FGF12P61328 243 aa12.51□□□□□ -0.41
TPM3-206ENST00000330188 RPL7L1Q6DKI1 246 aaKnown RBP12.51□□□□□ -0.41
TPM3-206ENST00000330188 SPERTQ8NA61 448 aa12.51□□□□□ -0.41
TPM3-206ENST00000330188 PRSS50Q9UI38 385 aa12.51□□□□□ -0.41
TPM3-206ENST00000330188 LSM5Q9Y4Y9 91 aaKnown RBP12.51□□□□□ -0.41
TPM3-206ENST00000330188 ZNF732B4DXR9 585 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 RPL12P30050 165 aaKnown RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 SMCO1Q147U7 214 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 SLC10A1Q14973 349 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 IGSF11Q5DX21 431 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 ATP1A1-AS1Q5TC04 95 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 LIAT1Q6ZQX7 453 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 ZFP62Q8NB50 900 aaPredicted RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 OR5L1Q8NGL2 311 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 OR11L1Q8NGX0 322 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 C18orf12Q96KH6 178 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 PRRX2Q99811 253 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 RSRP1Q9BUV0 290 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 K7EPK0 472 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 TSPAN4O14817 238 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 HERV-K104P61576 105 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 ZNF273Q14593 569 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 MST1LQ2TV78 715 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 Q6ZS49 121 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 LYZL2Q7Z4W2 148 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 FAM71E2Q8N5Q1 922 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 IL22RA1Q8N6P7 574 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 GLYATL2Q8WU03 294 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 MSI2Q96DH6 328 aaKnown RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 LRRC46Q96FV0 321 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 NARS2Q96I59 477 aaKnown RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 SYT3Q9BQG1 590 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 ZNF552Q9H707 407 aaPredicted RBP12.5□□□□□ -0.41
TPM3-206ENST00000330188 MTCH1Q9NZJ7 389 aa12.5□□□□□ -0.41
TPM3-206ENST00000330188 SHANK1Q9Y566 2161 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 H7C1Q1 480 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 LRP3O75074 770 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 PPYP01298 95 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 MBPP02686 304 aaPredicted RBP12.49□□□□□ -0.41
TPM3-206ENST00000330188 CD46P15529 392 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 RCC1P18754 421 aaPredicted RBP12.49□□□□□ -0.41
TPM3-206ENST00000330188 WNT5AP41221 380 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 EIF5AP63241 154 aaKnown RBP12.49□□□□□ -0.41
TPM3-206ENST00000330188 PLP2Q04941 152 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 TGIF1Q15583 401 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 OR5T2Q8NGG2 359 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 OR5A2Q8NGI9 324 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 LHFPL5Q8TAF8 219 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 ARL11Q969Q4 196 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 DEFB127Q9H1M4 99 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 OPA3Q9H6K4 179 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 C12orf49Q9H741 205 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 TMEM9BQ9NQ34 198 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 ZC4H2Q9NQZ6 224 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 PLSCR2Q9NRY7 297 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 RCC2Q9P258 522 aaKnown RBP12.49□□□□□ -0.41
TPM3-206ENST00000330188 IL36RNQ9UBH0 155 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 LPAR3Q9UBY5 353 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 AMDHD2Q9Y303 409 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 CD300LBA8K4G0 201 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 SCGB1D2O95969 90 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 IL18BPO95998 194 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 NAPSAO96009 420 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 ZNF806P0C7X5 589 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 GLI4P10075 376 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 DEFA5Q01523 94 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 SRSF7Q16629 238 aaKnown RBP eCLIP12.49□□□□□ -0.413e-11■■■■□ 20.4
TPM3-206ENST00000330188 HIKESHIQ53FT3 197 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 MKXQ8IYA7 352 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 WDYHV1Q96HA8 205 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 TAF9BQ9HBM6 251 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 Q9N2K0 584 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 FBXL17Q9UF56 701 aa12.49□□□□□ -0.41
TPM3-206ENST00000330188 NCOR1O75376 2440 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 KNTC1P50748 2209 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 TMEM218A2RU14 115 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 ZNF705EA8MWA4 302 aaPredicted RBP12.48□□□□□ -0.41
TPM3-206ENST00000330188 NUDT19A8MXV4 375 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 PRSS44E7EML9 344 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 TRAPPC2LH3BP13 241 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 SYNGR1O43759 233 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 MPV17LQ2QL34 196 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 TMEM268Q5VZI3 342 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 C5orf24Q7Z6I8 188 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 LGI3Q8N145 548 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 CCDC71LQ8N9Z2 235 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 OR4A4PQ8NGN8 299 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 OR1K1Q8NGR3 316 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 MMP26Q9NRE1 261 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 FAM86C1Q9NVL1 165 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 SPRR3Q9UBC9 169 aa12.48□□□□□ -0.41
TPM3-206ENST00000330188 ARGFXA6NJG6 315 aa12.47□□□□□ -0.41
TPM3-206ENST00000330188 ABCD4O14678 606 aa12.47□□□□□ -0.41
TPM3-206ENST00000330188 TPD52L2O43399 206 aaKnown RBP12.47□□□□□ -0.41
TPM3-206ENST00000330188 LILRA1O75019 489 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms