RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 A0A1W2PR48 441 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 C1QTNF12Q5T7M4 302 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 FBXL6Q8N531 539 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 NPEPL1Q8NDH3 523 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 SHISA4Q96DD7 197 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 NEU3Q9UQ49 428 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 SLC22A13Q9Y226 551 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 SBF2Q86WG5 1849 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CEBPBP17676 345 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CD82P27701 267 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CLEC12BQ2HXU8 276 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 RPS19BP1Q86WX3 136 aaKnown RBP12.76□□□□□ -0.37
COL7A1-201ENST00000328333 OR2J1Q9GZK6 312 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 SRD5A3Q9H8P0 318 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CDKN3Q16667 212 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 A0A087WUJ7 227 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CTXND1A0A1B0GTU2 59 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 BCL2P10415 239 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 ZNF816Q0VGE8 651 aaPredicted RBP12.76□□□□□ -0.37
COL7A1-201ENST00000328333 FGF13Q92913 245 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 PARD6GQ9BYG4 376 aaPredicted RBP12.76□□□□□ -0.37
COL7A1-201ENST00000328333 LIPGQ9Y5X9 500 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 OR2W5A6NFC9 320 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 FXYD1O00168 92 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 OPN1LWP04000 364 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CRYBA1P05813 215 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 MMP9P14780 707 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 GABRA1P14867 456 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 ACAA2P42765 397 aaKnown RBP12.76□□□□□ -0.37
COL7A1-201ENST00000328333 SMUG1Q53HV7 270 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 METTL1Q9UBP6 276 aaKnown RBP12.76□□□□□ -0.37
COL7A1-201ENST00000328333 A4GNTQ9UNA3 340 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 PDCD6O75340 191 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 PCP4P48539 62 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 NOVP48745 357 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 PTX4Q96A99 478 aa12.76□□□□□ -0.37
COL7A1-201ENST00000328333 CAPZBP47756 277 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 OR1D5P58170 312 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PPIAP62937 165 aaKnown RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 MBNL1Q9NR56 388 aaKnown RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 MPDU1O75352 247 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 MLF1P58340 268 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PTOV1Q86YD1 416 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 NUDT16L1Q9BRJ7 211 aaKnown RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PPM1DO15297 605 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 B4GALT3O60512 393 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PCMT1P22061 227 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 CXCL12P48061 93 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 ARHGAP5-AS1Q96IT6 56 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 OR2V2Q96R30 315 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 THADAQ6YHU6 1953 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 A0A1W2PPC4 97 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 SMAD2Q15796 467 aaKnown RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 BAHD1Q8TBE0 780 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 COL8A1P27658 744 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 CAMPP49913 170 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 MICBQ29980 383 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 F5H697 171 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 H3BP45 60 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 CDC14BO60729 498 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 FAHP16930 419 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 VN1R17PQ8TDU5 208 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PKIBQ9C010 78 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 FUT9Q9Y231 359 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 ICOSLGO75144 302 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 LIPFP07098 398 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 CDKN2AP42771 156 aaKnown RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 MLF2Q15773 248 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PLPPR5Q32ZL2 321 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 PWWP2BQ6NUJ5 590 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 OR6C3Q9NZP0 311 aa12.75□□□□□ -0.37
COL7A1-201ENST00000328333 HRO43593 1189 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 IZUMO4Q1ZYL8 232 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 ZBTB34Q8NCN2 500 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 ZNF764Q96H86 408 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 TWSG1Q9GZX9 223 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 PROCRQ9UNN8 238 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 PRRX1P54821 245 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 TEX30Q5JUR7 227 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 TMEM40Q8WWA1 233 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 HPXP02790 462 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SLC35E4Q6ICL7 350 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 PRR14Q9BWN1 585 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 C20orf141Q9NUB4 165 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 PEF1Q9UBV8 284 aaKnown RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 IFITM10A6NMD0 228 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 TMEM179BQ7Z7N9 219 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 CBLN2Q8IUK8 224 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 C16orf52Q8NHV5 167 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SARAFQ96BY9 339 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 LINC00597Q9H2U6 94 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 IL17BQ9UHF5 180 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 STARD10Q9Y365 291 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SSX8Q7RTT4 187 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SPACA9Q96E40 222 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-201ENST00000328333 SERTM1A2A2V5 107 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 GLI4P10075 376 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 CEACAM3P40198 252 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 CEACAM6P40199 344 aa12.74□□□□□ -0.37
COL7A1-201ENST00000328333 RBPMS2Q6ZRY4 209 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms