RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CLDN23Q96B33 292 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 RNF222A6NCQ9 220 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SPINT2O43291 252 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 IL2RAP01589 272 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 IRF2P14316 349 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 GNG3P63215 75 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 NCR3LG1Q68D85 454 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR4F5Q8NH21 305 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 SLC39A7Q92504 469 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 PINX1Q96BK5 328 aaKnown RBP12.92□□□□□ -0.34
TCOF1-201ENST00000323668 OR4F4Q96R69 305 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 ZNF251Q9BRH9 671 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 HIPK2Q9H2X6 1198 aa12.92□□□□□ -0.34
TCOF1-201ENST00000323668 CLDN34H7C241 214 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 NOVA1P51513 510 aaKnown RBP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 FER1L6-AS2Q96M78 137 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 PRF1P14222 555 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 LY6G6FQ5SQ64 297 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 TBC1D26Q86UD7 250 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 NECAP1Q8NC96 275 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 ACTR3CQ9C0K3 210 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 CASP8AP2Q9UKL3 1982 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 PDGFBP01127 241 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 MBP02144 154 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 PIGYQ3MUY2 71 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 FREM3P0C091 2139 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 SCAF4O95104 1147 aaKnown RBP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 CST2P09228 141 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 IGFBP3P17936 291 aaPredicted RBP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 ACKR3P25106 362 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 EWSR1Q01844 656 aaKnown RBP eCLIP12.91□□□□□ -0.34
TCOF1-201ENST00000323668 SSX2Q16385 188 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 TMEM211Q6ICI0 200 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 SHISA5Q8N114 240 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 ADAMTS17Q8TE56 1095 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 UHRF2Q96PU4 802 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 OPA3Q9H6K4 179 aa12.91□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1W2PNV4 684 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 MASP2O00187 686 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 DEDDO75618 318 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 CCL3P10147 92 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 COX5AP20674 150 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 OR8G1Q15617 311 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 GLRX5Q86SX6 157 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 OR10D4PQ8NGN7 298 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 ADGRG7Q96K78 797 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 LIPGQ9Y5X9 500 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 LOC101059948A0A1B0GTJ6 334 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 LINC01387J3KSC0 135 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 LPAR6P43657 344 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 IL24Q13007 206 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 PATZ1Q9HBE1 687 aaKnown RBP12.9□□□□□ -0.34
TCOF1-201ENST00000323668 SERTAD4Q9NUC0 356 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 RCC2Q9P258 522 aaKnown RBP12.9□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1W2PPE2 198 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 NKX2-6A6NCS4 301 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 TRAF3IP2O43734 574 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-201ENST00000323668 HKR1P10072 659 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 FAM27BQ5VT28 67 aa12.9□□□□□ -0.34
TCOF1-201ENST00000323668 A0A1B0GTI1 187 aa12.9□□□□□ -0.35
TCOF1-201ENST00000323668 ENDOGQ14249 297 aaKnown RBP12.9□□□□□ -0.35
TCOF1-201ENST00000323668 EDDM3AQ14507 147 aa12.9□□□□□ -0.35
TCOF1-201ENST00000323668 CHRNA10Q9GZZ6 450 aa12.9□□□□□ -0.35
TCOF1-201ENST00000323668 FAM234AQ9H0X4 552 aa12.9□□□□□ -0.35
TCOF1-201ENST00000323668 IGKV3D-11A0A0A0MRZ8 115 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 CHST1O43916 411 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 FCGR3AP08637 254 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 DYNLT3P51808 116 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 NHLH2Q02577 135 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 ACER2Q5QJU3 275 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 DYRK2Q92630 601 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 ERGIC1Q969X5 290 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 LAMP3Q9UQV4 416 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 TPRP12270 2363 aaKnown RBP12.89□□□□□ -0.35
TCOF1-201ENST00000323668 TMEM267Q0VDI3 215 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-201ENST00000323668 SLC10A1Q14973 349 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 CLEC12BQ2HXU8 276 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 ZNF528Q3MIS6 628 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 FNDC7Q5VTL7 733 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 SLC35G3Q8N808 338 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 LURAP1Q96LR2 239 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 CIB3Q96Q77 187 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-201ENST00000323668 CD200P41217 278 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 HLA-DRB3P79483 266 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 OR8B8Q15620 311 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 FAM58AQ8N1B3 248 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 UBAC2Q8NBM4 344 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 UBALD1Q8TB05 177 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 HPSE2Q8WWQ2 592 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 OCIAD1Q9NX40 245 aa12.89□□□□□ -0.35
TCOF1-201ENST00000323668 MDC1Q14676 2089 aaKnown RBP12.89□□□□□ -0.35
TCOF1-201ENST00000323668 FNDC1Q4ZHG4 1894 aaPredicted RBP12.89□□□□□ -0.35
TCOF1-201ENST00000323668 IGKV1D-43A0A0B4J1Z2 117 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 A0A1W2PPQ1 181 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 PMP22Q01453 160 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 TRA2AQ13595 282 aaKnown RBP eCLIP12.88□□□□□ -0.351e-7■■■■■ 31.7
TCOF1-201ENST00000323668 NCMAPQ5T1S8 102 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 OR13D1Q8NGV5 346 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 OR51I2Q9H344 312 aa12.88□□□□□ -0.35
TCOF1-201ENST00000323668 KCNIP2Q9NS61 270 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms