RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MFSD2BA6NFX1 497 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 RPS4Y1P22090 263 aaKnown RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 CAMPP49913 170 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 GUCA2BQ16661 112 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 FAM209BQ5JX69 171 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 TRAV8-7A0A075B6U6 113 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 ZNF880Q6PDB4 577 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 MRGPRGQ86SM5 289 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 ASB10Q8WXI3 467 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 RAB24Q969Q5 203 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 SARAFQ96BY9 339 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 NEURL1O76050 574 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 HOXB3P14651 431 aaPredicted RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 KIR2DS2P43631 304 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 RGS7BPQ6MZT1 257 aaPredicted RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 TRAT1Q6PIZ9 186 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 OR1L6Q8NGR2 347 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 STARD4Q96DR4 205 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 IP6K3Q96PC2 410 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 OR1A1Q9P1Q5 309 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 FAM74A7A6NL05 159 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 ZNF32P17041 273 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 VDAC1P21796 283 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 OPRK1P41145 380 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 LILRA6Q6PI73 481 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 CBLN3Q6UW01 205 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 VN1R4Q7Z5H5 301 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 OR10AC1Q8NH08 325 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 TRMT61AQ96FX7 289 aaKnown RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 DOCK1Q14185 1865 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 PPOXP50336 477 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 RPS4XP62701 263 aaKnown RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 SPINK9Q5DT21 86 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 ELOVL1Q9BW60 279 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 VSIG4Q9Y279 399 aa15.35■□□□□ 0.05
SYNPO-201ENST00000307662 KIAA0100Q14667 2235 aaKnown RBP15.35■□□□□ 0.05
SYNPO-201ENST00000307662 GLULP15104 373 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 RPL24P83731 157 aaKnown RBP15.34■□□□□ 0.05
SYNPO-201ENST00000307662 DPF1Q92782 380 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 PLPPR2Q96GM1 343 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 TMEM167BQ9NRX6 74 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 IL2RAP01589 272 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 SMIM17P0DL12 118 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 LYRM7Q5U5X0 104 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 OR4F17Q8NGA8 305 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 LRRC61Q9BV99 259 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 ST6GALNAC2Q9UJ37 374 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 DEFB108AA8MXU0 73 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 LINC01387J3KSC0 135 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 ISXQ2M1V0 245 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 ADIPOR1Q96A54 375 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 MOB3AQ96BX8 217 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 FBXO17Q96EF6 278 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 SMDT1Q9H4I9 107 aa15.34■□□□□ 0.05
SYNPO-201ENST00000307662 ZNF552Q9H707 407 aaPredicted RBP15.34■□□□□ 0.05
SYNPO-201ENST00000307662 TMIGD3P0DMS9 266 aaPredicted RBP15.33■□□□□ 0.05
SYNPO-201ENST00000307662 MUC1P15941 1255 aaPredicted RBP15.33■□□□□ 0.05
SYNPO-201ENST00000307662 SLC52A3Q9NQ40 469 aa15.33■□□□□ 0.05
SYNPO-201ENST00000307662 CNTRLQ7Z7A1 2325 aa15.33■□□□□ 0.05
SYNPO-201ENST00000307662 VSIG10L2P0DP72 767 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 CA6P23280 308 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 B2MP61769 119 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 HIST3H3Q16695 136 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 GPR27Q9NS67 375 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 ABCA3Q99758 1704 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 ZNF207O43670 478 aaKnown RBP15.33■□□□□ 0.04
SYNPO-201ENST00000307662 SEMA7AO75326 666 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 FAM87AP0C7U9 286 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 GPR3P46089 330 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 ATG4DQ86TL0 474 aaPredicted RBP15.33■□□□□ 0.04
SYNPO-201ENST00000307662 PUSL1Q8N0Z8 303 aaKnown RBP15.33■□□□□ 0.04
SYNPO-201ENST00000307662 MRGPRX3Q96LB0 322 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 TRDCB7Z8K6 153 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 CDS2O95674 445 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 SP1P08047 785 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 CXorf67Q86X51 503 aaPredicted RBP15.33■□□□□ 0.04
SYNPO-201ENST00000307662 ZNF547Q8IVP9 402 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 OR1L4Q8NGR5 311 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 ASB5Q8WWX0 329 aa15.33■□□□□ 0.04
SYNPO-201ENST00000307662 PAPPA2Q9BXP8 1791 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 RAB7AP51149 207 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 PABPC1L2AQ5JQF8 200 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 SLC7A10Q9NS82 523 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 PDE6DO43924 150 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 RBP4P02753 201 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 EFNB2P52799 333 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 DCAF12L2Q5VW00 463 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 DCAF16Q9NXF7 216 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 ANKRD34CP0C6C1 535 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 ZNF660Q6AZW8 331 aaPredicted RBP15.32■□□□□ 0.04
SYNPO-201ENST00000307662 BCL3P20749 454 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 KHDC3LQ587J8 217 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 BLNKQ8WV28 456 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 PCED1AQ9H1Q7 454 aa15.32■□□□□ 0.04
SYNPO-201ENST00000307662 SRFP11831 508 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 S100A4P26447 101 aaKnown RBP15.31■□□□□ 0.04
SYNPO-201ENST00000307662 LINC00518Q8N0U6 118 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 RFESDQ8TAC1 157 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 FBLIM1Q8WUP2 373 aa15.31■□□□□ 0.04
SYNPO-201ENST00000307662 HSF4Q9ULV5 492 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms