RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 HRKO00198 91 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 GNRHRP30968 328 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 FMODQ06828 376 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 IL15RAQ13261 267 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ACOT6Q3I5F7 207 aaPredicted RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF506Q5JVG8 444 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 PRR22Q8IZ63 422 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 LYG1Q8N1E2 194 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ZCCHC14Q8WYQ9 949 aaKnown RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 PGAM5Q96HS1 289 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 IL23AQ9NPF7 189 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 R4GMQ9 66 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 IGLON5A6NGN9 336 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 SERINC4A6NH21 518 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM50BP56557 158 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 FBXW4P57775 412 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ZIC1Q15915 447 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 TMEM241Q24JQ0 296 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 C6orf201Q7Z4U5 140 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 OR52N5Q8NH56 324 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 PTPMT1Q8WUK0 201 aaPredicted RBP12.85□□□□□ -0.35
PTPRA-201ENST00000216877 IRF7Q92985 503 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 ACY3Q96HD9 319 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 SHANK1Q9Y566 2161 aa12.85□□□□□ -0.35
PTPRA-201ENST00000216877 MAP1LC3B2A6NCE7 125 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 A8MXE2 369 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 PVRP15151 417 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 KLF3P57682 345 aaPredicted RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 MLF2Q15773 248 aaPredicted RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 C1orf100Q5SVJ3 147 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 METRNLQ641Q3 311 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 OR11L1Q8NGX0 322 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 CCDC3Q9BQI4 270 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 MAP1LC3BQ9GZQ8 125 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 PLK3Q9H4B4 646 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 TRPM6Q9BX84 2022 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 GPR75O95800 540 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF43P17038 809 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 HSD11B1P28845 292 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 UCP2P55851 309 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 NRSN1Q8IZ57 195 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 NUDT10Q8NFP7 164 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 CDH20Q9HBT6 801 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 RYDENQ9NUL5 291 aaKnown RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 DENND4CQ5VZ89 1909 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 SNRNP200O75643 2136 aaKnown RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 GTF3C1Q12789 2109 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 VWA8A3KMH1 1905 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 A0A0A6YYD4 124 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 NUPR1O60356 82 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 ZNF10P21506 573 aaPredicted RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 GALNSP34059 522 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 SUMO1P63165 101 aaKnown RBP12.84□□□□□ -0.35
PTPRA-201ENST00000216877 NOXO1Q8NFA2 376 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 RSG1Q9BU20 258 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 SDF2L1Q9HCN8 221 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 HCFC2Q9Y5Z7 792 aa12.84□□□□□ -0.35
PTPRA-201ENST00000216877 ZDBF2Q9HCK1 2354 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 RPS4Y1P22090 263 aaKnown RBP12.83□□□□□ -0.36
PTPRA-201ENST00000216877 CDKN1BP46527 198 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 DGAT2L6Q6ZPD8 337 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 ATOH7Q8N100 152 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 FBXL14Q8N1E6 418 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 RERGQ96A58 199 aaPredicted RBP12.83□□□□□ -0.36
PTPRA-201ENST00000216877 NUDT11Q96G61 164 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 RCC1LQ96I51 464 aaKnown RBP12.83□□□□□ -0.36
PTPRA-201ENST00000216877 OSGIN2Q9Y236 505 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 OBSL1O75147 1896 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 NKX6-3A6NJ46 265 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 RIPPLY3P57055 190 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 FAM160A2Q8N612 972 aaPredicted RBP12.83□□□□□ -0.36
PTPRA-201ENST00000216877 ZNF160Q9HCG1 818 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 GPR84Q9NQS5 396 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 UNC13CQ8NB66 2214 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 ESPL1Q14674 2120 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 IGKV1D-8A0A087WSZ0 117 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 IGSF23A1L1A6 192 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 F6UZH7 168 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 RPL19P84098 196 aaKnown RBP12.83□□□□□ -0.36
PTPRA-201ENST00000216877 IL24Q13007 206 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 VN1R4Q7Z5H5 301 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 ZNF695Q8IW36 515 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 C20orf196Q8IYI0 205 aa12.83□□□□□ -0.36
PTPRA-201ENST00000216877 PRSS37A4D1T9 235 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 LRRC3CA6NJW4 275 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 TNFRSF10CO14798 259 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 IGFBP3P17936 291 aaPredicted RBP12.82□□□□□ -0.36
PTPRA-201ENST00000216877 GCH1P30793 250 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 RAC1P63000 192 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 PSG6Q00889 435 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 ZNF765Q7L2R6 523 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 ZNF738Q8NE65 137 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 CADM4Q8NFZ8 388 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 OR5L2Q8NGL0 311 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 ZDHHC11Q9H8X9 412 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 Q9N2K0 584 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 MED12Q93074 2177 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 IGKV1D-42A0A075B6H8 117 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 KIR2DL5BA0A0G2JN68 375 aa12.82□□□□□ -0.36
PTPRA-201ENST00000216877 KIR2DL5BA0A0G2JPC4 375 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms