RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 UBE2IP63279 158 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PGGHGQ32M88 737 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 HNRNPA1L2Q32P51 320 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR2B11Q5JQS5 317 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DNLZQ5SXM8 178 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 C1orf127Q8N9H9 656 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 BVESQ8NE79 360 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR13C6PQ8NH95 151 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TSGA13Q96PP4 275 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 HEYLQ9NQ87 328 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TREM2Q9NZC2 230 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PHLPP1O60346 1717 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM233B4DJY2 109 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 M0R3E3 92 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF749O43361 778 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 BCL2L11O43521 198 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ETHE1O95571 254 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CGB7P0DN87 165 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GATA3P23771 443 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GPR6P46095 362 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 METAP1P53582 386 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 JAG1P78504 1218 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 JOSD1Q15040 202 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GABRA6Q16445 453 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 IL17AQ16552 155 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF468Q5VIY5 522 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DHRS7BQ6IAN0 325 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LYPD4Q6UWN0 246 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CLEC18BQ6UXF7 455 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ADGRG5Q8IZF4 528 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FAM24BQ8N5W8 94 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CELF2-AS1Q8N7Q2 184 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CLEC18CQ8NCF0 446 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR10P1Q8NGE3 313 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR2I1PQ8NGU4 316 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 BAHD1Q8TBE0 780 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FBXO17Q96EF6 278 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 EMC6Q9BV81 110 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF337Q9Y3M9 751 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 STYXL1Q9Y6J8 313 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SMIM28A0A1B0GU29 152 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 H7C1C5 153 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 KRASP01116 189 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 PMP2P02689 132 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GFRA1P56159 465 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RPS26P62854 115 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 C22orf39Q6P5X5 142 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 KIRREL2Q6UWL6 708 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM64Q6YI46 380 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 BATF2Q8N1L9 274 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR6K3Q8NGY3 331 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF502Q8TBZ5 544 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 YIPF6Q96EC8 236 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FAM210BQ96KR6 192 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FEVQ99581 238 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GSX2Q9BZM3 304 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NRIP3Q9NQ35 241 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SLC7A10Q9NS82 523 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MARCH4Q9P2E8 410 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DIMT1Q9UNQ2 313 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 AUP1Q9Y679 476 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DIP2CQ9Y2E4 1556 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NLRC5Q86WI3 1866 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MFSD2BA6NFX1 497 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RAB29O14966 203 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 AMBPP02760 352 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CELA3AP09093 270 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GPR4P46093 362 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TCL1AP56279 114 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 DCAF12L2Q5VW00 463 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 LRRC55Q6ZSA7 311 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 B3GNT8Q7Z7M8 397 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL52Q86TS9 123 aaKnown RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GPR32P1Q8NGA4 272 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 C19orf43Q9BQ61 176 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF629Q9UEG4 869 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 VDAC3Q9Y277 283 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 COX11Q9Y6N1 276 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TNS2Q63HR2 1409 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TOGARAM1Q9Y4F4 1720 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR7C1O76099 320 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 HTR1FP30939 366 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CLDN17P56750 224 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MFAP5Q13361 173 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 TEPPQ6URK8 271 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR4B1Q8NGF8 309 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 FGF13Q92913 245 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 MOGAT1Q96PD6 335 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR2D2Q9H210 308 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 SLC26A1Q9H2B4 701 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NDUFA12Q9UI09 145 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 RIMS3Q9UJD0 308 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CDC42EP3Q9UKI2 254 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 ADAMTS7Q9UKP4 1686 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 APOMO95445 188 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CELA3BP08861 270 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 OR1E2P47887 323 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 NPBWR2P48146 333 aa2.5□□□□□ -2.01
SCN1A-219ENST00000641575 CDC34P49427 236 aaPredicted RBP2.5□□□□□ -2.01
SCN1A-219ENST00000641575 GNG4P50150 75 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms