RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 SSX2Q16385 188 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 ZIK1Q3SY52 487 aaPredicted RBP11.25□□□□□ -0.61
LINC00339-211ENST00000641009 TMEM244Q5VVB8 128 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF626Q68DY1 528 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 CCBE1Q6UXH8 406 aaPredicted RBP11.25□□□□□ -0.61
LINC00339-211ENST00000641009 LIAT1Q6ZQX7 453 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 TMEM219Q86XT9 240 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 DNAAF1Q8NEP3 725 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 OR11H6Q8NGC7 330 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 TRUB1Q8WWH5 349 aaKnown RBP11.25□□□□□ -0.61
LINC00339-211ENST00000641009 RFT1Q96AA3 541 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 HRASLS5Q96KN8 279 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 NPFFR1Q9GZQ6 430 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 AASSQ9UDR5 926 aa11.25□□□□□ -0.61
LINC00339-211ENST00000641009 TBL2Q9Y4P3 447 aaKnown RBP11.25□□□□□ -0.61
LINC00339-211ENST00000641009 TRBV2A0A0J9YWF9 115 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 DAPL1A0PJW8 107 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 VSIG10L2P0DP72 767 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF20P17024 532 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 JUNBP17275 347 aaPredicted RBP11.24□□□□□ -0.61
LINC00339-211ENST00000641009 PRKACAP17612 351 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 AZGP1P25311 298 aaKnown RBP11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ACTA2P62736 377 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ACTG2P63267 376 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ACTC1P68032 377 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ACTA1P68133 377 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF91Q05481 1191 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 HABP2Q14520 560 aaPredicted RBP11.24□□□□□ -0.61
LINC00339-211ENST00000641009 C11orf88Q6PI97 169 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 Q8IYB0 196 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 FAM58AQ8N1B3 248 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 OR4S1Q8NGB4 309 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 OR51A4Q8NGJ6 313 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 OR10AC1Q8NH08 325 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 CFHR4Q92496 578 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 FOXRED1Q96CU9 486 aaPredicted RBP11.24□□□□□ -0.61
LINC00339-211ENST00000641009 MALSU1Q96EH3 234 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF702PQ9H963 129 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 TCF19Q9Y242 345 aa11.24□□□□□ -0.61
LINC00339-211ENST00000641009 NOTCH3Q9UM47 2321 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 hADV38S2A0JD32 116 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 H3BNX3 289 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 SLC16A6O15403 523 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 CYB5AP00167 134 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ISG15P05161 165 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ATF1P18846 271 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 PEX2P28328 305 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF146Q15072 292 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 UTS2BQ765I0 119 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 RNF144BQ7Z419 303 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ENTHD1Q8IYW4 607 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF676Q8N7Q3 588 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 RPS4Y2Q8TD47 263 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 SPACA5Q96QH8 159 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 MBOAT4Q96T53 435 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ABCB10Q9NRK6 738 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 ORC6Q9Y5N6 252 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 LINC00312Q9Y6C7 94 aa11.23□□□□□ -0.61
LINC00339-211ENST00000641009 A6NDX4 124 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 E9PQ18 207 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 J3QLW9 94 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SIRPB1O00241 398 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 HTR1AP08908 422 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 ZNF19P17023 458 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 PRKACBP22694 351 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 OR3A1P47881 315 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SNRPGP62308 76 aaKnown RBP11.22□□□□□ -0.61
LINC00339-211ENST00000641009 PDZK1IP1Q13113 114 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 KPNB1Q14974 876 aaKnown RBP11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SLC25A30Q5SVS4 291 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 FDX2Q6P4F2 183 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 LHFPL2Q6ZUX7 228 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 KCTD20Q7Z5Y7 419 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 LYG1Q8N1E2 194 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 OR5D18Q8NGL1 313 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 OR13C3Q8NGS6 347 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 PELI1Q96FA3 418 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 C4orf36Q96KX1 117 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 OPALINQ96PE5 141 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SEBOXQ9HB31 216 aaPredicted RBP11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SERTAD4Q9NUC0 356 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 GSTK1Q9Y2Q3 226 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 HILPDAQ9Y5L2 63 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 SESN1Q9Y6P5 492 aa11.22□□□□□ -0.61
LINC00339-211ENST00000641009 IGHV2-26A0A0B4J1V2 119 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 IGKV1-12A0A0C4DH73 117 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 MGST3O14880 152 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 MMP23AO75900 390 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 IGKV1D-12P01611 117 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 OCM2P0CE71 109 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 OCMP0CE72 109 aaPredicted RBP11.21□□□□□ -0.61
LINC00339-211ENST00000641009 ALDH3A2P51648 485 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 MEDAGQ5VYS4 303 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 BAIAP2L2Q6UXY1 529 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 TRAPPC6BQ86SZ2 158 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 ACBD7Q8N6N7 88 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 SPSB1Q96BD6 273 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 LGALS12Q96DT0 336 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 HMG20AQ9NP66 347 aa11.21□□□□□ -0.61
LINC00339-211ENST00000641009 HHLA2Q9UM44 414 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms