RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 A0A0J9YYE9 177 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LOC389332A0A1B0GUA5 103 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LOC102725191A0A1B0GVB3 256 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A1W2PQL4 384 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 A0A1W2PRD5 423 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR5H14A6NHG9 310 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LRRIQ4A6NIV6 560 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LEUTXA8MZ59 168 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HACD1B0YJ81 288 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM250H0YL14 139 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 K7ERS5 55 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF701M0R085 212 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 DFFAO00273 331 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRDMT1O14717 391 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CPLX1O14810 134 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PLA2G10O15496 165 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 XRCC2O43543 280 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TCF21O43680 179 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC37A4O43826 429 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 DNAJB6O75190 326 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PLEKHA8P1O95397 391 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ETHE1O95571 254 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NAPSAO96009 420 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PTHP01270 115 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 P01737 135 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRBC1P01850 177 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RHOCP08134 193 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CECR9P0C854 216 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 UBCP0CG48 685 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF705DP0CH99 300 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF705BP0CI00 300 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR8G3PP0DMU2 310 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 GTF2F2P13984 249 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 M6PRP20645 277 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 GSTM3P21266 225 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TUBG1P23258 451 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 IMPA1P29218 277 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HMOX2P30519 316 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 EVI2BP34910 448 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ARL2P36404 184 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HTR2BP41595 481 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PSMB2P49721 201 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PLTPP55058 493 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CLDN6P56747 220 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C21orf59P57076 290 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RGS8P57771 180 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RAB11AP62491 216 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RPL10AP62906 217 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC35A1P78382 337 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BEX3Q00994 111 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LAMTOR4Q0VGL1 99 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MERTKQ12866 999 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MMDQ15546 238 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CST6Q15828 149 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SSX1Q16384 188 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BCL2A1Q16548 175 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CEACAM16Q2WEN9 425 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMEM176BQ3YBM2 270 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PYCR3Q53H96 274 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SPIN4Q56A73 249 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TTC32Q5I0X7 151 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SPANXN2Q5MJ10 180 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CLEC12AQ5QGZ9 265 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TIMM23BQ5SRD1 257 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 FAM201AQ5SY85 155 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HES3Q5TGS1 186 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LGALS9CQ6DKI2 356 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TWF2Q6IBS0 349 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C16orf87Q6PH81 154 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF773Q6PK81 442 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BZW1Q7L1Q6 419 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TAS2R42Q7RTR8 314 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SSX9Q7RTT3 188 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NANOGNBQ7Z5D8 188 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 GALNT10Q86SR1 603 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CMTM8Q8IZV2 173 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 KIF2BQ8N4N8 673 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TRAM1L1Q8N609 369 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 KRTCAP2Q8N6L1 136 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZFAND2AQ8N6M9 145 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZIC4Q8N9L1 334 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR8K1Q8NGG5 319 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR5C1Q8NGR4 320 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MFSD8Q8NHS3 518 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SUN5Q8TC36 379 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NT5CQ8TCD5 201 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZFAND1Q8TCF1 268 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TCP10LQ8TDR4 215 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 GPR119Q8TDV5 335 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C2orf15Q8WU43 125 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BLNKQ8WV28 456 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 KCTD4Q8WVF5 259 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BAALCQ8WXS3 180 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NAT6Q93015 286 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMBIM1Q969X1 311 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ISOC2Q96AB3 205 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TMIGD2Q96BF3 282 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF707Q96C28 371 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RCN3Q96D15 328 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CMBLQ96DG6 245 aa-0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms