RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 LIN7BQ9HAP6 207 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.48■□□□□ 0.07
CLN3-262ENST00000637699 SLC7A11Q9UPY5 501 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 LINC00312Q9Y6C7 94 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 R4GMQ9 66 aa15.48■□□□□ 0.07
CLN3-262ENST00000637699 H3BSH0 61 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 MMP23AO75900 390 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 IGHA1P01876 353 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 GABRR1P24046 479 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 GRK1Q15835 563 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 ZNF322Q6U7Q0 402 aaPredicted RBP15.47■□□□□ 0.07
CLN3-262ENST00000637699 ZBTB49Q6ZSB9 765 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 EGFL6Q8IUX8 553 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 LINC00482Q8N8I6 264 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 OR52N4Q8NGI2 321 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 OR4P4Q8NGL7 312 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 DPF1Q92782 380 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 CNN2Q99439 309 aaKnown RBP15.47■□□□□ 0.07
CLN3-262ENST00000637699 MOB1AQ9H8S9 216 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 DPM3Q9P2X0 92 aa15.47■□□□□ 0.07
CLN3-262ENST00000637699 IGKV1-27A0A075B6S5 117 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 PEX2P28328 305 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 BRS3P32247 399 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 CXCR4P61073 352 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 ODF4Q2M2E3 257 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 C9orf152Q5JTZ5 239 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 SLX4IPQ5VYV7 408 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 BAIAP2L2Q6UXY1 529 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 TRAPPC6BQ86SZ2 158 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 EMG1Q92979 244 aaKnown RBP15.46■□□□□ 0.07
CLN3-262ENST00000637699 UTP4Q969X6 686 aaKnown RBP15.46■□□□□ 0.07
CLN3-262ENST00000637699 SLC25A19Q9HC21 320 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 IL36RNQ9UBH0 155 aa15.46■□□□□ 0.07
CLN3-262ENST00000637699 HAND1O96004 215 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 ANXA8P13928 327 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 DUSP1P28562 367 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 UBE2V2Q15819 145 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 SLC25A26Q70HW3 274 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 MRPL41Q8IXM3 137 aaKnown RBP15.45■□□□□ 0.06
CLN3-262ENST00000637699 ABHD12Q8N2K0 398 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 RBM14Q96PK6 669 aaKnown RBP15.45■□□□□ 0.06
CLN3-262ENST00000637699 PLEKHA1Q9HB21 404 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 SNX5Q9Y5X3 404 aa15.45■□□□□ 0.06
CLN3-262ENST00000637699 FAM172BPA6NC97 362 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 DHRS7CA6NNS2 312 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 PSPNO60542 156 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 OR2F2O95006 317 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 AMY1AP04745 511 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 AMY2AP04746 511 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 CCDC159P0C7I6 412 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 ACTR3P61158 418 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 PRAMEF5Q5TYX0 476 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 Q6ZSR3 168 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 BCDIN3DQ7Z5W3 292 aaKnown RBP15.44■□□□□ 0.06
CLN3-262ENST00000637699 SLC35F2Q8IXU6 374 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 ZNF649Q9BS31 505 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 GPR61Q9BZJ8 451 aa15.44■□□□□ 0.06
CLN3-262ENST00000637699 MRM2Q9UI43 246 aaKnown RBP15.44■□□□□ 0.06
CLN3-262ENST00000637699 RPP14O95059 124 aaKnown RBP15.43■□□□□ 0.06
CLN3-262ENST00000637699 CALCBP10092 127 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 DAPP51397 102 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 FUT6P51993 359 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 ARHGDIBP52566 201 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 SNU13P55769 128 aaKnown RBP15.43■□□□□ 0.06
CLN3-262ENST00000637699 FAHD1Q6P587 224 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 NRBF2Q96F24 287 aa15.43■□□□□ 0.06
CLN3-262ENST00000637699 LEUTXA8MZ59 168 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 ZNF670-ZNF695F2Z2N8 137 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 MGST3O14880 152 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 PRKYO43930 277 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 CCL1P22362 96 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 NPBWR2P48146 333 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 BDH1Q02338 343 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 ZNF91Q05481 1191 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 ETV3LQ6ZN32 361 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 MEPCEQ7L2J0 689 aaKnown RBP15.42■□□□□ 0.06
CLN3-262ENST00000637699 OSR2Q8N2R0 312 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 ZNF596Q8TC21 504 aa15.42■□□□□ 0.06
CLN3-262ENST00000637699 PAPOLBQ9NRJ5 636 aaKnown RBP15.42■□□□□ 0.06
CLN3-262ENST00000637699 RBFOX1Q9NWB1 397 aaKnown RBP15.42■□□□□ 0.06
CLN3-262ENST00000637699 UBE2J1Q9Y385 318 aaPredicted RBP15.42■□□□□ 0.06
CLN3-262ENST00000637699 KIAA2026Q5HYC2 2103 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 PSMB11A5LHX3 300 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 M0R129 80 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 SYT7O43581 403 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 CDK2P24941 298 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 OR3A1P47881 315 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 RASSF2P50749 326 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 CRISP1P54107 249 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 P2RX3P56373 397 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 OR52W1Q6IF63 320 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 RNF144BQ7Z419 303 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 ZNF329Q86UD4 541 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 RTN4RL2Q86UN3 420 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 ENTHD1Q8IYW4 607 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 YIPF7Q8N8F6 280 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 OR51D1Q8NGF3 324 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 BORCS8Q96FH0 119 aa15.41■□□□□ 0.06
CLN3-262ENST00000637699 SEBOXQ9HB31 216 aaPredicted RBP15.41■□□□□ 0.06
CLN3-262ENST00000637699 ADGRL4Q9HBW9 690 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms