RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 F8VWA3 439 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 GLRA1P23415 457 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 BTN1A1Q13410 526 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 DAZAP2Q15038 168 aaPredicted RBP13.44□□□□□ -0.26
CLN3-251ENST00000636853 LRRC37A5PQ49AS3 106 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 TMEM128Q5BJH2 165 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 DPPA2Q7Z7J5 298 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 PEG10Q86TG7 708 aaKnown RBP13.44□□□□□ -0.26
CLN3-251ENST00000636853 C9orf106Q8NAJ2 232 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 ASB13Q8WXK3 278 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 HS3ST6Q96QI5 342 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 PRR13Q9NZ81 148 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 ANXA10Q9UJ72 324 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 BOD1L1Q8NFC6 3051 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 OR7C1O76099 320 aaPredicted RBP13.43□□□□□ -0.26
CLN3-251ENST00000636853 FCGR3AP08637 254 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 GMFBP60983 142 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 SLC9A3R2Q15599 337 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 PCDHB16Q9NRJ7 776 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 SVILO95425 2214 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 RFPL4AA6NLU0 287 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 RFPL4AL1F8VTS6 287 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 PDCD6O75340 191 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 ZNF205O95201 554 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 IDH3GP51553 393 aaPredicted RBP13.43□□□□□ -0.26
CLN3-251ENST00000636853 IGFBP7Q16270 282 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 OR2T2Q6IF00 324 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 VWA1Q6PCB0 445 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 ZADH2Q8N4Q0 377 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 BVESQ8NE79 360 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 TMEM185AQ8NFB2 350 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 PCNPQ8WW12 178 aaKnown RBP13.43□□□□□ -0.26
CLN3-251ENST00000636853 SARAFQ96BY9 339 aa13.43□□□□□ -0.26
CLN3-251ENST00000636853 ZNF2Q9BSG1 426 aaPredicted RBP13.43□□□□□ -0.26
CLN3-251ENST00000636853 CD8AP01732 235 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 ZNF14P17017 642 aaPredicted RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 S100A11P31949 105 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 KIR2DL2P43627 348 aaPredicted RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 UBE2NP61088 152 aaKnown RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 GUSBP1Q15486 140 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 LPCAT3Q6P1A2 487 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 TMUB2Q71RG4 321 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 SCGB3A2Q96PL1 93 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 HIST1H2AAQ96QV6 131 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 CEP250Q9BV73 2442 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 AKAP13Q12802 2813 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 ANKRD30BLA7E2S9 258 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 RP2O75695 350 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 PGAM2P15259 253 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 HLA-GP17693 338 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 SUPT4H1P63272 117 aaKnown RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 TGFBR3Q03167 851 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 SRSF4Q08170 494 aaKnown RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 FOXF2Q12947 444 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 ESPL1Q14674 2120 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 ZNF169Q14929 603 aaPredicted RBP13.42□□□□□ -0.26
CLN3-251ENST00000636853 TBC1D28Q2M2D7 210 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 CLEC18BQ6UXF7 455 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 OR5L1Q8NGL2 311 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 ARL6Q9H0F7 186 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 LIME1Q9H400 295 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 OPA3Q9H6K4 179 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 MTCH1Q9NZJ7 389 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 IL36RNQ9UBH0 155 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 EDARQ9UNE0 448 aa13.42□□□□□ -0.26
CLN3-251ENST00000636853 EEF1E1-BLOC1S5C9J1V9 151 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 RRP8O43159 456 aaKnown RBP13.41□□□□□ -0.26
CLN3-251ENST00000636853 KLK10O43240 276 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 SYNGR1O43759 233 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 SFT2D2O95562 160 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 DTYMKP23919 212 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 GABRA6Q16445 453 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 ZNF585AQ6P3V2 769 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 Q6ZT83 130 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 OR5A2Q8NGI9 324 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 PPP1R1CQ8WVI7 109 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 OR5P3Q8WZ94 311 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 C1QTNF6Q9BXI9 259 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 ZNF442Q9H7R0 627 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 PLSCR2Q9NRY7 297 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 GVINP1Q7Z2Y8 2422 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 C13orf42A0A1B0GVH6 325 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 DBX1A6NMT0 343 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 KNG1P01042 644 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 OR5H8P0DN80 308 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 FUT3P21217 361 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 CA6P23280 308 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 HAGHLQ6PII5 290 aaPredicted RBP13.41□□□□□ -0.26
CLN3-251ENST00000636853 Q6ZPA2 131 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 OR5T2Q8NGG2 359 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 MARS2Q96GW9 593 aaKnown RBP13.41□□□□□ -0.26
CLN3-251ENST00000636853 PRRX2Q99811 253 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 MFFQ9GZY8 342 aa13.41□□□□□ -0.26
CLN3-251ENST00000636853 A0A1B0GW55 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 C5orf51A6NDU8 294 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 C3orf80F5H4A9 247 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 ABCD4O14678 606 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4L2P0CJ85 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4L3P0CJ86 424 aa13.4□□□□□ -0.26
CLN3-251ENST00000636853 DUX4L4P0CJ87 422 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms