RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 SIGIRRQ6IA17 410 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 Q6ZS49 121 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 WDR86Q86TI4 376 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 HOGA1Q86XE5 327 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 WFDC8Q8IUA0 241 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 CADM3Q8N126 398 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 FAM58AQ8N1B3 248 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 SCCPDHQ8NBX0 429 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 CA5BP1Q8WTZ4 195 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 C20orf85Q9H1P6 137 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 KCNJ16Q9NPI9 418 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 NPDC1Q9NQX5 325 aaPredicted RBP8.99□□□□□ -0.97
CLN3-248ENST00000636355 MCUBQ9NWR8 336 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 FBXO9Q9UK97 447 aaPredicted RBP8.99□□□□□ -0.97
CLN3-248ENST00000636355 TANC2Q9HCD6 1990 aa8.99□□□□□ -0.97
CLN3-248ENST00000636355 SETXQ7Z333 2677 aaKnown RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 CEACAM18A8MTB9 384 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 DISC1C4P0D8 188 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 H7C1Q1 480 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 SYNGR1O43759 233 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 CD3DP04234 171 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 PRB1P04280 392 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 TNFSF4P23510 183 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 HLA-DMAP28067 261 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 ECI1P42126 302 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 NPBWR2P48146 333 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 FABP6P51161 128 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 RBM39Q14498 530 aaKnown RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 DAZAP2Q15038 168 aaPredicted RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 SMIM21Q3B7S5 101 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 ALKBH6Q3KRA9 238 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 FAM209AQ5JX71 171 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 ZNF782Q6ZMW2 699 aaPredicted RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 Q6ZR03 302 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 MOB1BQ7L9L4 216 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 C6orf201Q7Z4U5 140 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 TMEM17Q86X19 198 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 SNAPC3Q92966 411 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 DVL3Q92997 716 aaPredicted RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 FBXW5Q969U6 566 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 MED30Q96HR3 178 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 ZMAT3Q9HA38 289 aaKnown RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 MYOZ1Q9NP98 299 aaPredicted RBP8.98□□□□□ -0.97
CLN3-248ENST00000636355 RASL12Q9NYN1 266 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 MGAT4AQ9UM21 535 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 IGSF10Q6WRI0 2623 aa8.98□□□□□ -0.97
CLN3-248ENST00000636355 TRBV6-6A0A0A6YYG2 114 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 DPRXA6NFQ7 191 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 FAM90A27PA6NNH2 459 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 NXPH2O95156 264 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 GOSR1O95249 250 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 DIRAS3O95661 229 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 KNG1P01042 644 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 CD55P08174 381 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 FCGR3AP08637 254 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 H2AFB2P0C5Z0 115 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 PRKACAP17612 351 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 AMY2BP19961 511 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 KCNJ3P48549 501 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 PAX5Q02548 391 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 TFF3Q07654 80 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 IKZF1Q13422 519 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 SURF2Q15527 256 aaPredicted RBP8.97□□□□□ -0.97
CLN3-248ENST00000636355 EFNB3Q15768 340 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 NKAPLQ5M9Q1 402 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 METTL11BQ5VVY1 283 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 SLC22A25Q6T423 547 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 PIAS4Q8N2W9 510 aaPredicted RBP8.97□□□□□ -0.97
CLN3-248ENST00000636355 BEST4Q8NFU0 473 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 OR5H2Q8NGV7 314 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 PRR7Q8TB68 274 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 ELMOD3Q96FG2 381 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 WFIKKN1Q96NZ8 548 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 CMSS1Q9BQ75 279 aaKnown RBP8.97□□□□□ -0.97
CLN3-248ENST00000636355 ALX4Q9H161 411 aaPredicted RBP8.97□□□□□ -0.97
CLN3-248ENST00000636355 MMP28Q9H239 520 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 FN3KRPQ9HA64 309 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 IL19Q9UHD0 177 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 GLS2Q9UI32 602 aa8.97□□□□□ -0.97
CLN3-248ENST00000636355 A0A0B4J293 547 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 ZSCAN5BA6NJL1 495 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 F5H5P2 479 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 IFNL4K9M1U5 179 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 NAPSAO96009 420 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 AMY2AP04746 511 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 IFNA6P05013 189 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 IL5P05113 134 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 CD3EP07766 207 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 PLA2G2AP14555 144 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 HRH1P35367 487 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 ZNF81P51508 661 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 CCR6P51684 374 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 SNU13P55769 128 aaKnown RBP8.96□□□□□ -0.98
CLN3-248ENST00000636355 RAB25P57735 213 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 UBE2MP61081 183 aaKnown RBP8.96□□□□□ -0.98
CLN3-248ENST00000636355 MAB21L1Q13394 359 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 CDK10Q15131 360 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 TESK1Q15569 626 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 NKPD1Q17RQ9 610 aa8.96□□□□□ -0.98
CLN3-248ENST00000636355 MSMPQ1L6U9 139 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms