RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 DUX4L9Q6RFH8 374 aaPredicted RBP15.03■□□□□ -0
CLN3-243ENST00000635973 BTNL3Q6UXE8 466 aa15.03■□□□□ -0
CLN3-243ENST00000635973 ZNF841Q6ZN19 808 aa15.03■□□□□ -0
CLN3-243ENST00000635973 SAXO1Q8IYX7 474 aa15.03■□□□□ -0
CLN3-243ENST00000635973 FAM58AQ8N1B3 248 aa15.03■□□□□ -0
CLN3-243ENST00000635973 JAGN1Q8N5M9 183 aa15.03■□□□□ -0
CLN3-243ENST00000635973 ZSCAN4Q8NAM6 433 aaPredicted RBP15.03■□□□□ -0
CLN3-243ENST00000635973 TMEM185AQ8NFB2 350 aa15.03■□□□□ -0
CLN3-243ENST00000635973 FAM216AQ8WUB2 273 aa15.03■□□□□ -0
CLN3-243ENST00000635973 NKX3-1Q99801 234 aaPredicted RBP15.03■□□□□ -0
CLN3-243ENST00000635973 SLC6A7Q99884 636 aa15.03■□□□□ -0
CLN3-243ENST00000635973 SLITRK2Q9H156 845 aa15.03■□□□□ -0
CLN3-243ENST00000635973 DUX4Q9UBX2 424 aa15.03■□□□□ -0
CLN3-243ENST00000635973 PPIAL4CA0A0B4J2A2 164 aa15.02■□□□□ -0
CLN3-243ENST00000635973 MAGEA13PA6NCF6 341 aa15.02■□□□□ -0
CLN3-243ENST00000635973 F8VVB4 439 aa15.02■□□□□ -0
CLN3-243ENST00000635973 F8VWA3 439 aa15.02■□□□□ -0
CLN3-243ENST00000635973 CCRL2O00421 344 aa15.02■□□□□ -0
CLN3-243ENST00000635973 SIGLEC5O15389 551 aa15.02■□□□□ -0
CLN3-243ENST00000635973 PIN1P1O15428 100 aa15.02■□□□□ -0
CLN3-243ENST00000635973 KDM4BO94953 1096 aa15.02■□□□□ -0
CLN3-243ENST00000635973 CALCBP10092 127 aa15.02■□□□□ -0
CLN3-243ENST00000635973 SELLP14151 372 aa15.02■□□□□ -0
CLN3-243ENST00000635973 PRKACAP17612 351 aa15.02■□□□□ -0
CLN3-243ENST00000635973 PRDX2P32119 198 aa15.02■□□□□ -0
CLN3-243ENST00000635973 OR3A4PP47883 348 aa15.02■□□□□ -0
CLN3-243ENST00000635973 NPBWR2P48146 333 aa15.02■□□□□ -0
CLN3-243ENST00000635973 CEBPDP49716 269 aaPredicted RBP15.02■□□□□ -0
CLN3-243ENST00000635973 FAM27D1Q5T7N8 215 aa15.02■□□□□ -0
CLN3-243ENST00000635973 CD276Q5ZPR3 534 aa15.02■□□□□ -0
CLN3-243ENST00000635973 ZNF788Q6ZQV5 615 aa15.02■□□□□ -0
CLN3-243ENST00000635973 C3orf56Q8N813 242 aa15.02■□□□□ -0
CLN3-243ENST00000635973 NKAIN3Q8N8D7 197 aa15.02■□□□□ -0
CLN3-243ENST00000635973 S100A13Q99584 98 aa15.02■□□□□ -0
CLN3-243ENST00000635973 MRI1Q9BV20 369 aa15.02■□□□□ -0
CLN3-243ENST00000635973 VCX3AQ9NNX9 186 aa15.02■□□□□ -0
CLN3-243ENST00000635973 SLC25A10Q9UBX3 287 aaPredicted RBP15.02■□□□□ -0
CLN3-243ENST00000635973 GLS2Q9UI32 602 aa15.02■□□□□ -0
CLN3-243ENST00000635973 ZNF222Q9UK12 451 aa15.02■□□□□ -0
CLN3-243ENST00000635973 IGKV1-12A0A0C4DH73 117 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 ENSAO43768 121 aaKnown RBP15.01□□□□□ -0.01
CLN3-243ENST00000635973 IGKV1D-12P01611 117 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 NDUFB7P17568 137 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 AMY2BP19961 511 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 RSU1Q15404 277 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 SSX1Q16384 188 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 DGUOKQ16854 277 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 CRIP3Q6Q6R5 217 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 UNQ9370/PRO34162Q6UXP9 181 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 TSPAN14Q8NG11 270 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 C22orf15Q8WYQ4 148 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 H1FXQ92522 213 aaKnown RBP15.01□□□□□ -0.01
CLN3-243ENST00000635973 NUDT16L1Q9BRJ7 211 aaKnown RBP15.01□□□□□ -0.01
CLN3-243ENST00000635973 MMP26Q9NRE1 261 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 NDUFB11Q9NX14 153 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 POLR3KQ9Y2Y1 108 aaPredicted RBP15.01□□□□□ -0.01
CLN3-243ENST00000635973 AUP1Q9Y679 476 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 DOCK11Q5JSL3 2073 aa15.01□□□□□ -0.01
CLN3-243ENST00000635973 A0A087WXM4 84 aa15□□□□□ -0.01
CLN3-243ENST00000635973 IGHV2-70DA0A0C4DH43 119 aa15□□□□□ -0.01
CLN3-243ENST00000635973 MEGF11A6BM72 1044 aa15□□□□□ -0.01
CLN3-243ENST00000635973 SC5DO75845 299 aa15□□□□□ -0.01
CLN3-243ENST00000635973 ARL6IP5O75915 188 aa15□□□□□ -0.01
CLN3-243ENST00000635973 UCHL1P09936 223 aa15□□□□□ -0.01
CLN3-243ENST00000635973 CFPP27918 469 aa15□□□□□ -0.01
CLN3-243ENST00000635973 PTGFRP43088 359 aa15□□□□□ -0.01
CLN3-243ENST00000635973 FABP5Q01469 135 aa15□□□□□ -0.01
CLN3-243ENST00000635973 FGFRL1Q8N441 504 aa15□□□□□ -0.01
CLN3-243ENST00000635973 ZNF561Q8N587 486 aa15□□□□□ -0.01
CLN3-243ENST00000635973 CD177Q8N6Q3 437 aa15□□□□□ -0.01
CLN3-243ENST00000635973 ASCC1Q8N9N2 400 aaKnown RBP15□□□□□ -0.01
CLN3-243ENST00000635973 ZNRF1Q8ND25 227 aa15□□□□□ -0.01
CLN3-243ENST00000635973 PXT1Q8NFP0 134 aa15□□□□□ -0.01
CLN3-243ENST00000635973 RAB40AQ8WXH6 277 aa15□□□□□ -0.01
CLN3-243ENST00000635973 PHYHIPQ92561 330 aa15□□□□□ -0.01
CLN3-243ENST00000635973 SDSLQ96GA7 329 aa15□□□□□ -0.01
CLN3-243ENST00000635973 RHOFQ9HBH0 211 aa15□□□□□ -0.01
CLN3-243ENST00000635973 HMG20AQ9NP66 347 aa15□□□□□ -0.01
CLN3-243ENST00000635973 IL36RNQ9UBH0 155 aa15□□□□□ -0.01
CLN3-243ENST00000635973 OPN4Q9UHM6 478 aa15□□□□□ -0.01
CLN3-243ENST00000635973 ING4Q9UNL4 249 aa15□□□□□ -0.01
CLN3-243ENST00000635973 GSTK1Q9Y2Q3 226 aa15□□□□□ -0.01
CLN3-243ENST00000635973 SF3B6Q9Y3B4 125 aaKnown RBP15□□□□□ -0.01
CLN3-243ENST00000635973 C22orf46C9J442 243 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 CDRT1O95170 752 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 ECDO95905 644 aaPredicted RBP14.99□□□□□ -0.01
CLN3-243ENST00000635973 HAND1O96004 215 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 SFTPBP07988 381 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 SRMP19623 302 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 BMXP51813 675 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 COL10A1Q03692 680 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 SPIN3Q5JUX0 258 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 AWAT2Q6E213 333 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 TMEM91Q6ZNR0 172 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 BTN2A1Q7KYR7 527 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 OR10K1Q8NGX5 313 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 MUL1Q969V5 352 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 METTL9Q9H1A3 318 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 ZNF696Q9H7X3 374 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 NUP50Q9UKX7 468 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms