RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 GCGP01275 180 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 SCGB1C2P0DMR2 95 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 CGB3P0DN86 165 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 CGB7P0DN87 165 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 MSR1P21757 451 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 BLVRBP30043 206 aaPredicted RBP0.48□□□□□ -2.33
SCN1A-208ENST00000625916 COILP38432 576 aaPredicted RBP0.48□□□□□ -2.33
SCN1A-208ENST00000625916 SS18Q15532 418 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF404Q494X3 552 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 UBE2NLQ5JXB2 153 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 TPRG1LQ5T0D9 272 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 Q6ZRU5 148 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 FAM122BQ7Z309 247 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 DPPA2Q7Z7J5 298 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 NAA40Q86UY6 237 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 RBM45Q8IUH3 476 aaKnown RBP0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ZFAND1Q8TCF1 268 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 SCGB1C1Q8TD33 95 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 OR2M4Q96R27 311 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 AICDAQ9GZX7 198 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 CXCL16Q9H2A7 254 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ASB7Q9H672 318 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 C6orf50Q9HD87 102 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 PRSS16Q9NQE7 514 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 FAM206AQ9NX38 181 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 TAS2R9Q9NYW1 312 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 CYB5R1Q9UHQ9 305 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 KLF12Q9Y4X4 402 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 PLXNB3Q9ULL4 1909 aa0.48□□□□□ -2.33
SCN1A-208ENST00000625916 ADAMTS7Q9UKP4 1686 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 A0A1W2PRG6 482 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 LRRIQ4A6NIV6 560 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 SLC22A20A6NK97 555 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 FNDC10F2Z333 226 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 RNF113AO15541 343 aaKnown RBP0.47□□□□□ -2.33
SCN1A-208ENST00000625916 GPR75O95800 540 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 PSMB9P28065 219 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 EMP2P54851 167 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 ATP6V0D1P61421 351 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 CLLU1OSQ5K130 101 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 NIPAL1Q6NVV3 410 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 MICU2Q8IYU8 434 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 BBS5Q8N3I7 341 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 TCAIMQ8N3R3 496 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 TRAM1L1Q8N609 369 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 OR4C16Q8NGL9 310 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 ZNF563Q8TA94 476 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 DCANP1Q8TF63 244 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 C22orf15Q8WYQ4 148 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 ISOC2Q96AB3 205 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 BPIFA3Q9BQP9 254 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 C11orf70Q9BRQ4 267 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 SLC19A3Q9BZV2 496 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 PORCNQ9H237 461 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 VPS37BQ9H9H4 285 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 MRPS30Q9NP92 439 aaKnown RBP0.47□□□□□ -2.33
SCN1A-208ENST00000625916 NMRK1Q9NWW6 199 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 VPREB3Q9UKI3 123 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 C14orf166Q9Y224 244 aaKnown RBP0.47□□□□□ -2.33
SCN1A-208ENST00000625916 GBF1Q92538 1859 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 NOS1P29475 1434 aa0.47□□□□□ -2.33
SCN1A-208ENST00000625916 C2orf16Q68DN1 1984 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 MDN1Q9NU22 5596 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 FAM240AA0A1B0GVK7 77 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SLC5A10A0PJK1 596 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CD300LBA8K4G0 201 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 ODF3BA8MYP8 253 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 F8VP50 259 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 ZNF701M0R085 212 aaPredicted RBP0.46□□□□□ -2.34
SCN1A-208ENST00000625916 TCAPO15273 167 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SIVA1O15304 175 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 EEF1E1O43324 174 aaKnown RBP0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SH2D1AO60880 128 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SNX4O95219 450 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 ETHE1O95571 254 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 GUSBP08236 651 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 OR12D1P0DN82 309 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 PSKH1P11801 424 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 TAC1P20366 129 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 ELK4P28324 431 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 S100A2P29034 98 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 HCCSP53701 268 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CLDN18P56856 261 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 IDI1Q13907 227 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CASP8Q14790 479 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 TMEM215Q68D42 235 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SCXQ7RTU7 201 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CCDC148Q8NFR7 591 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 OR6K3Q8NGY3 331 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 NT5CQ8TCD5 201 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CACNG8Q8WXS5 425 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 HIST1H2BAQ96A08 127 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 DDIT4LQ96D03 193 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 ANAPC13Q9BS18 74 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 OR2D2Q9H210 308 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 LYRM4Q9HD34 91 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SDHAF3Q9NRP4 125 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 MRPL22Q9NWU5 206 aaKnown RBP0.46□□□□□ -2.34
SCN1A-208ENST00000625916 RAB20Q9NX57 234 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 TBC1D24Q9ULP9 559 aa0.46□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms