RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ZFP62Q8NB50 900 aaPredicted RBP9.16□□□□□ -0.94
CUX1-221ENST00000622516 OR10C1Q96KK4 312 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 ZNF488Q96MN9 340 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 BCO1Q9HAY6 547 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 ANXA10Q9UJ72 324 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 KMT2EQ8IZD2 1858 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 CADP27708 2225 aa9.16□□□□□ -0.94
CUX1-221ENST00000622516 CACNA1DQ01668 2161 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 RNF222A6NCQ9 220 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 DBX1A6NMT0 343 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 IL18BPO95998 194 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 OR5H8P0DN80 308 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 BCL3P20749 454 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 CHATP28329 748 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 SOX8P57073 446 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 PRDX4Q13162 271 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 Q6ZPA2 131 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 MRPL21Q7Z2W9 205 aaKnown RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 THAP6Q8TBB0 222 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 WDYHV1Q96HA8 205 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 ZNF471Q9BX82 626 aaPredicted RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 ZNF442Q9H7R0 627 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 CHMP1AQ9HD42 196 aaPredicted RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 TNFSF18Q9UNG2 199 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 GTF3C1Q12789 2109 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 ADGRG4Q8IZF6 3080 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 LGALS8O00214 317 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 XRCC2O43543 280 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 SFT2D2O95562 160 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 RRASP10301 218 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 FPR2P25090 351 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 DAZAP2Q15038 168 aaPredicted RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 AANATQ16613 207 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 ACTBL2Q562R1 376 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 MYPOPQ86VE0 399 aaPredicted RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 OR5M9Q8NGP3 310 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 HPSE2Q8WWQ2 592 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 REPIN1Q9BWE0 567 aaKnown RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 LINC00470Q9BZP3 86 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 PRDM14Q9GZV8 571 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 RGCCQ9H4X1 137 aa9.15□□□□□ -0.94
CUX1-221ENST00000622516 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.15□□□□□ -0.943e-6■■□□□ 13.5
CUX1-221ENST00000622516 INTS1Q8N201 2190 aaKnown RBP9.15□□□□□ -0.94
CUX1-221ENST00000622516 ACACAQ13085 2346 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 SLC22A20A6NK97 555 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 H0YIZ8 118 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 GALR2O43603 387 aaPredicted RBP9.15□□□□□ -0.95
CUX1-221ENST00000622516 FCGR3AP08637 254 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 CELA3BP08861 270 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 PTGER4P35408 488 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 RBMXP38159 391 aaKnown RBP9.15□□□□□ -0.95
CUX1-221ENST00000622516 FGL1Q08830 312 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 CLN3Q13286 438 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 FAHD2BQ6P2I3 314 aaPredicted RBP9.15□□□□□ -0.95
CUX1-221ENST00000622516 SLC22A25Q6T423 547 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 TMEM185AQ8NFB2 350 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 OR6K3Q8NGY3 331 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 DCUN1D4Q92564 292 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 RRNAD1Q96FB5 475 aaKnown RBP9.15□□□□□ -0.95
CUX1-221ENST00000622516 FAHD2AQ96GK7 314 aa9.15□□□□□ -0.95
CUX1-221ENST00000622516 CUL9Q8IWT3 2517 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 ZNF732B4DXR9 585 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 CRHP06850 196 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 RPS2P15880 293 aaKnown RBP9.14□□□□□ -0.95
CUX1-221ENST00000622516 PSMB6P28072 239 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 TNFSF10P50591 281 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 TAS2R31P59538 309 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 PHLDA2Q53GA4 152 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 LPCAT3Q6P1A2 487 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 COLCA1Q6ZS62 124 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 PEG10Q86TG7 708 aaKnown RBP9.14□□□□□ -0.95
CUX1-221ENST00000622516 ST8SIA2Q92186 375 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 WBP1Q96G27 269 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 POM121L2Q96KW2 1035 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 IP6K3Q96PC2 410 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 PPP1R14DQ9NXH3 145 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 KANTRA0A1W2PQU2 76 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 RPL36A-HNRNPH2H7BZ11 118 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 AGTR1P30556 359 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 WNT5AP41221 380 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 NOVA1P51513 510 aaKnown RBP9.14□□□□□ -0.95
CUX1-221ENST00000622516 RNPS1Q15287 305 aaKnown RBP9.14□□□□□ -0.95
CUX1-221ENST00000622516 OR2T2Q6IF00 324 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 TMEM200AQ86VY9 491 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 CCDC54Q8NEL0 328 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 SCARB1Q8WTV0 552 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 MARC2Q969Z3 335 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 SPSB4Q96A44 273 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 GPHA2Q96T91 129 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 OR5AC2Q9NZP5 309 aa9.14□□□□□ -0.95
CUX1-221ENST00000622516 DIDO1Q9BTC0 2240 aaKnown RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 TEX13DA0A0J9YY54 714 aaPredicted RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 ZNF724A8MTY0 619 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 F5H0A9 414 aaPredicted RBP9.13□□□□□ -0.95
CUX1-221ENST00000622516 SIGLEC5O15389 551 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 SYNGR1O43759 233 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 LYZL6O75951 148 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 HLA-GP17693 338 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 FCGR2CP31995 323 aa9.13□□□□□ -0.95
CUX1-221ENST00000622516 S100A10P60903 97 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms