RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 WIPI1Q5MNZ9 446 aaPredicted RBP12.2□□□□□ -0.46
COL6A1-207ENST00000612273 NSUN5P2Q63ZY6 315 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 ZIC4Q8N9L1 334 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 MMP24Q9Y5R2 645 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 ACAA1P09110 424 aaPredicted RBP12.2□□□□□ -0.46
COL6A1-207ENST00000612273 RFPL3SP0C7P2 107 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 AADACP22760 399 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 PPA1Q15181 289 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 FAM189A2Q15884 450 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 HIST3H3Q16695 136 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 EIF2S3LQ2VIR3 472 aaKnown RBP12.2□□□□□ -0.46
COL6A1-207ENST00000612273 KMT5CQ86Y97 462 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 CALHM1Q8IU99 346 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 SLC35G3Q8N808 338 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 NAT6Q93015 286 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF845Q96IR2 970 aaPredicted RBP12.2□□□□□ -0.46
COL6A1-207ENST00000612273 TP53RKQ96S44 253 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 NIT2Q9NQR4 276 aa12.2□□□□□ -0.46
COL6A1-207ENST00000612273 CEACAM18A8MTB9 384 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 KLK3P07288 261 aaPredicted RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 CTSDP07339 412 aaPredicted RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 FABP9Q0Z7S8 132 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 RPS19BP1Q86WX3 136 aaKnown RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 PRR18Q8N4B5 295 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 SSC4DQ8WTU2 575 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 ABHD3Q8WU67 409 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 HIST1H2BAQ96A08 127 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 HS3ST6Q96QI5 342 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 NAA60Q9H7X0 242 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 COA4Q9NYJ1 87 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 CACFD1Q9UGQ2 172 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 UBE2J1Q9Y385 318 aaPredicted RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 TRAV39A0A0B4J263 110 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 NKX2-6A6NCS4 301 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF587BE7ETH6 402 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 SSSCA1O60232 199 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 CXCL12P48061 93 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 LSM6P62312 80 aaKnown RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 CCL20P78556 96 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 RUNX1Q01196 453 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 NCMAPQ5T1S8 102 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 SLC16A14Q7RTX9 510 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 BCL2L14Q9BZR8 327 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 ANAPC10Q9UM13 185 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 COL4A2P08572 1712 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 PRR14LQ5THK1 2151 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 ZNF727A8MUV8 499 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 CD5P06127 495 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 AAED1Q7RTV5 226 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 GPR137CQ8N3F9 429 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 KCNJ16Q9NPI9 418 aa12.19□□□□□ -0.46
COL6A1-207ENST00000612273 MRPS17Q9Y2R5 130 aaKnown RBP12.19□□□□□ -0.46
COL6A1-207ENST00000612273 BORCS7-ASMTA0A0B4J1R7 106 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 HSD17B6O14756 317 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 TAAR5O14804 337 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 CARD18P57730 90 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 PCOLCEQ15113 449 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 SLC25A53Q5H9E4 307 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 CXorf66Q5JRM2 361 aaPredicted RBP12.18□□□□□ -0.46
COL6A1-207ENST00000612273 FANCFQ9NPI8 374 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 C19orf12Q9NSK7 152 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 ZDHHC8Q9ULC8 765 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 V9GYS6 101 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 DOCK10Q96BY6 2186 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 FOXI3A8MTJ6 420 aaPredicted RBP12.18□□□□□ -0.46
COL6A1-207ENST00000612273 SSR4P51571 173 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 H3F3AP84243 136 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 TMEM187Q14656 261 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 TSC22D1Q15714 1073 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 HLA-BQ31612 363 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 OPN5Q6U736 354 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 TMEM123Q8N131 208 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 OSR2Q8N2R0 312 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 OR1F12Q8NHA8 337 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 NUDT16L1Q9BRJ7 211 aaKnown RBP12.18□□□□□ -0.46
COL6A1-207ENST00000612273 SMOC1Q9H4F8 434 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 CEP250Q9BV73 2442 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 CACNA1GO43497 2377 aa12.18□□□□□ -0.46
COL6A1-207ENST00000612273 ARPC4-TTLL3A0A0A6YYG9 625 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 NSG1A0A0A6YYJ2 146 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 A0A0U1RQV5 110 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 E5RGE8 158 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 ST8SIA3O43173 380 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 H2AFB1P0C5Y9 115 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 LIFP15018 202 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 GNRHRP30968 328 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 GLP1RP43220 463 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 PSG4Q00888 419 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 C10orf91Q5T1B1 145 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 C17orf78Q8N4C9 275 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 PARP11Q9NR21 331 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 LUZP4Q9P127 313 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 SLC7A11Q9UPY5 501 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 NSG2Q9Y328 171 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 HS3ST3B1Q9Y662 390 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 GVINP1Q7Z2Y8 2422 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 TRBV23-1A0A0A0MS06 115 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 S100A9P06702 114 aaKnown RBP12.17□□□□□ -0.46
COL6A1-207ENST00000612273 PTAFRP25105 342 aa12.17□□□□□ -0.46
COL6A1-207ENST00000612273 GNMTQ14749 295 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms