RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 FAM60AQ9NP50 221 aa18.08■□□□□ 0.48
UPF1-207ENST00000599848 UNQ9370/PRO34162Q6UXP9 181 aa18.08■□□□□ 0.48
UPF1-207ENST00000599848 KLHDC1Q8N7A1 406 aa18.08■□□□□ 0.48
UPF1-207ENST00000599848 SLC25A10Q9UBX3 287 aaPredicted RBP18.08■□□□□ 0.48
UPF1-207ENST00000599848 PDPNQ86YL7 162 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 PCGF1Q9BSM1 259 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 ZNF426Q9BUY5 554 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 TECRQ9NZ01 308 aaKnown RBP18.07■□□□□ 0.48
UPF1-207ENST00000599848 C9orf172C9J069 976 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 DCTN6O00399 190 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 MC5RP33032 325 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 SURF2Q15527 256 aaPredicted RBP18.07■□□□□ 0.48
UPF1-207ENST00000599848 MYO18AQ92614 2054 aaKnown RBP18.07■□□□□ 0.48
UPF1-207ENST00000599848 GPANK1O95872 356 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 CD300LDQ6UXZ3 194 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 ZNF629Q9UEG4 869 aaPredicted RBP18.07■□□□□ 0.48
UPF1-207ENST00000599848 C3orf85A0A1B0GTC6 90 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 A0A1W2PRD5 423 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 A0A1W2PRF3 423 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 A0A1W2PRM7 423 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 CEACAM1P13688 526 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 NTF3P20783 257 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 MMP15P51511 669 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 R3HDM4Q96D70 268 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 TMEM38BQ9NVV0 291 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 IL19Q9UHD0 177 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 RABAC1Q9UI14 185 aa18.07■□□□□ 0.48
UPF1-207ENST00000599848 GAPDHP04406 335 aaKnown RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 CCL3P10147 92 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 OR1L8Q8NGR8 309 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 ELOVL5Q9NYP7 299 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 HMX2A2RU54 273 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 RPL7P18124 248 aaKnown RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 COX19Q49B96 90 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 EIF4E3Q8N5X7 224 aaKnown RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 ZNF519Q8TB69 540 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 VSTM2LQ96N03 204 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 OR4C12Q96R67 309 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 MAP1BP46821 2468 aaKnown RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 FOXH1O75593 365 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 M6PRP20645 277 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 PTTG1IPP53801 180 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 ANKRD55Q3KP44 614 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 TMEM30BQ3MIR4 351 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 FFAR4Q5NUL3 377 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 DHRS7BQ6IAN0 325 aaPredicted RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 OR8I2Q8N0Y5 310 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 NOL4LQ96MY1 436 aaPredicted RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 PILRBQ9UKJ0 227 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 PLAC9Q5JTB6 97 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 DRAXINQ8NBI3 349 aaPredicted RBP18.06■□□□□ 0.48
UPF1-207ENST00000599848 CLEC5AQ9NY25 188 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 MIOXQ9UGB7 285 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 KCNE3Q9Y6H6 103 aa18.06■□□□□ 0.48
UPF1-207ENST00000599848 C21orf58P58505 322 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 MMDQ15546 238 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 CCDC190Q86UF4 302 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 TCAPO15273 167 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 GPX5O75715 221 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 HERVK_113P61574 105 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 IL13RA2Q14627 380 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 RRN3P1Q2M238 152 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 LIAT1Q6ZQX7 453 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 CABLES2Q9BTV7 478 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 TCHHQ07283 1943 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 NGFRP08138 427 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 FABP5Q01469 135 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 DERL3Q96Q80 235 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 NAA60Q9H7X0 242 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 DOCK2Q92608 1830 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 KIAA0141Q14154 515 aaPredicted RBP18.05■□□□□ 0.48
UPF1-207ENST00000599848 GCSAMQ8N6F7 178 aa18.05■□□□□ 0.48
UPF1-207ENST00000599848 CISD1Q9NZ45 108 aaKnown RBP18.05■□□□□ 0.48
UPF1-207ENST00000599848 HSBP1O75506 76 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 ZNF705AQ6ZN79 300 aaPredicted RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 C10orf90Q96M02 699 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 NAA50Q9GZZ1 169 aaKnown RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 AKR7A2O43488 359 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 C1QBP02746 253 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 FUCA1P04066 466 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 LIMK1P53667 647 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 TINAGQ9UJW2 476 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 GATCO43716 136 aaKnown RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 IGHA1P01876 353 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 IGHA2P01877 340 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 NQO2P16083 231 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 PI3P19957 117 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 COMPP49747 757 aaPredicted RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 LOXL3P58215 753 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 RPL31P62899 125 aaKnown RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 RNF212Q495C1 297 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 ZNF770Q6IQ21 691 aaPredicted RBP18.04■□□□□ 0.48
UPF1-207ENST00000599848 RIMKLAQ8IXN7 391 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 NPAS1Q99742 590 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 ZDHHC11Q9H8X9 412 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 LOC102723971A0A1B0GUV8 181 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 RFPL4AA6NLU0 287 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 RFPL4AL1F8VTS6 287 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 WNT9BO14905 357 aa18.04■□□□□ 0.48
UPF1-207ENST00000599848 SLC37A1P57057 533 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms