RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 MRPS14O60783 128 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 TK1P04183 234 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 LIPFP07098 398 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 BDKRB2P30411 391 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 TGFBR2P37173 567 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 RPS25P62851 125 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 SSX1Q16384 188 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 ACSM3Q53FZ2 586 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 DDI2Q5TDH0 399 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 C17orf107Q6ZR85 190 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 PHC2Q8IXK0 858 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 MS4A15Q8N5U1 240 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 Q8N7P7 452 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 DMRTB1Q96MA1 342 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 MGLLQ99685 303 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 MRI1Q9BV20 369 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 YTHDF1Q9BYJ9 559 aaKnown RBP16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 Q9H521 79 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 OR14J1Q9UGF5 321 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 FOXJ3Q9UPW0 622 aa16.06■□□□□ 0.16
SHKBP1-221ENST00000599833 PSPNO60542 156 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 HAND1O96004 215 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 CD37P11049 281 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 DUSP1P28562 367 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 SRP14P37108 136 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 ELP2Q6IA86 826 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 Q6P435 159 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 LRRTM1Q86UE6 522 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 SPARTQ8N0X7 666 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 PNLDC1Q8NA58 520 aaKnown RBP16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM185AQ8NFB2 350 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 NANPQ8TBE9 248 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 C1orf147Q96MC9 270 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 WDFY2Q96P53 400 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 TMED9Q9BVK6 235 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 CNTD2Q9H8S5 307 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 RHOFQ9HBH0 211 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 C19orf12Q9NSK7 152 aa16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 SOX21Q9Y651 276 aaPredicted RBP16.05■□□□□ 0.16
SHKBP1-221ENST00000599833 CHRM2P08172 466 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 UCHL1P09936 223 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 PRKACAP17612 351 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 EPHA1P21709 976 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 EEF1B2P24534 225 aaKnown RBP16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 LMO1P25800 156 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 PTGFRP43088 359 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 PPP3R1P63098 170 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 SPIN3Q5JUX0 258 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 UBE2UQ5VVX9 321 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 TCF23Q7RTU1 214 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF367Q7RTV3 350 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 C11orf42Q8N5U0 333 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 KIR3DL3Q8N743 410 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 TNFAIP8L1Q8WVP5 186 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 UFD1Q92890 307 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 TNFRSF14Q92956 283 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 FAM234AQ9H0X4 552 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 NEK6Q9HC98 313 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 IL36GQ9NZH8 169 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF69Q9UC07 566 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 KPTNQ9Y664 436 aa16.04■□□□□ 0.16
SHKBP1-221ENST00000599833 OCMP0CE72 109 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM225BP0DP42 221 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 NDUFB7P17568 137 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF93P35789 620 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 DLX1P56177 255 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 ARF6P62330 175 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 C9orf139Q6ZV77 190 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 SATL1Q86VE3 508 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 BCL6BQ8N143 479 aaPredicted RBP16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 OR51T1Q8NGJ9 327 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 OR10K1Q8NGX5 313 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF581Q9P0T4 197 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 NUP50Q9UKX7 468 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 LRRC42Q9Y546 428 aa16.03■□□□□ 0.16
SHKBP1-221ENST00000599833 TRBV23-1A0A0A0MS06 115 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 TRAV40A0A0B4J280 105 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 CDRT1O95170 752 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 OR2H2O95918 312 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 CYB5AP00167 134 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 HSMCR30P0CW71 290 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 OR3A1P47881 315 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 SNU13P55769 128 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 FABP5Q01469 135 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 OR8H2Q8N162 312 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 TEX29Q8N6K0 151 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 OR4S1Q8NGB4 309 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 H1FXQ92522 213 aaKnown RBP16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 TMEM203Q969S6 136 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 SNX22Q96L94 193 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 ZNF48Q96MX3 618 aaPredicted RBP16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 GFI1Q99684 422 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 GSTK1Q9Y2Q3 226 aa16.02■□□□□ 0.16
SHKBP1-221ENST00000599833 IGHV3OR16-10A0A075B7F0 116 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 CENPVL3A0A0U1RRI6 287 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 MAGEB3O15480 346 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 TOX4O94842 621 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 MAS1P04201 325 aa16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 MAPK3P27361 379 aaPredicted RBP16.01■□□□□ 0.15
SHKBP1-221ENST00000599833 MTNR1BP49286 362 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms