RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 PDCD1LG2Q9BQ51 273 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 VCX3BQ9H321 246 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 UNKLQ9H9P5 680 aaKnown RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 SEBOXQ9HB31 216 aaPredicted RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 EXOSC4Q9NPD3 245 aaKnown RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 C19orf12Q9NSK7 152 aa11.61□□□□□ -0.55
LIG1-218ENST00000599322 SOX21Q9Y651 276 aaPredicted RBP11.61□□□□□ -0.55
LIG1-218ENST00000599322 IGKV1-9A0A0C4DH69 117 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 A0A1W2PRD5 423 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 A0A1W2PRF3 423 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 A0A1W2PRM7 423 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 ANKRD65E5RJM6 399 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 RNASEK-C17orf49H0YIS7 233 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 MYL12BO14950 172 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 CASQ2O14958 399 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 SPRY1O43609 319 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 LIMS3P0CW19 117 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 LIMS4P0CW20 117 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 PIPP12273 146 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 CFPP27918 469 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 ETV1P50549 477 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 TAS2R43P59537 309 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 ADARB1P78563 741 aaKnown RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 GABPB1Q06547 395 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 GRK1Q15835 563 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 MIDNQ504T8 468 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 OGFRL1Q5TC84 451 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 TMEM200BQ69YZ2 307 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 GDPGP1Q6ZNW5 385 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 SATL1Q86VE3 508 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 OR8H2Q8N162 312 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 PARP16Q8N5Y8 322 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 Q8N7P7 452 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 OR51A4Q8NGJ6 313 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 OR10AC1Q8NH08 325 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 DYRK2Q92630 601 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 RNF166Q96A37 237 aaPredicted RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 RFT1Q96AA3 541 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 BEX1Q9HBH7 125 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 PCDHB16Q9NRJ7 776 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 CNOT2Q9NZN8 540 aaKnown RBP11.6□□□□□ -0.55
LIG1-218ENST00000599322 CKLFQ9UBR5 152 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 GSTK1Q9Y2Q3 226 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 ZNF281Q9Y2X9 895 aa11.6□□□□□ -0.55
LIG1-218ENST00000599322 FAM181BA6NEQ2 426 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 E9PI62 339 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 H3BUI4 141 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 MGST3O14880 152 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 ZNF44P15621 663 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 BCL3P20749 454 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 SOX2P48431 317 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 SNU13P55769 128 aaKnown RBP11.59□□□□□ -0.55
LIG1-218ENST00000599322 SLC34A1Q06495 639 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 ST3GAL4Q11206 333 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 EDDM3AQ14507 147 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 CDK5R1Q15078 307 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 KISS1Q15726 138 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 SHISA2Q6UWI4 295 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 TRAPPC6BQ86SZ2 158 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 LDLRAD3Q86YD5 345 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 OR5D18Q8NGL1 313 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 OR13D1Q8NGV5 346 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 OR52N1Q8NH53 320 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 OR5R1Q8NH85 324 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 C1orf147Q96MC9 270 aaPredicted RBP11.59□□□□□ -0.55
LIG1-218ENST00000599322 HMG20AQ9NP66 347 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 RBFOX1Q9NWB1 397 aaKnown RBP11.59□□□□□ -0.55
LIG1-218ENST00000599322 SCN3BQ9NY72 215 aa11.59□□□□□ -0.55
LIG1-218ENST00000599322 H0YHG0 523 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 RBP4P02753 201 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 ZNF728P0DKX0 622 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 DUSP1P28562 367 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 SAA4P35542 130 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 NPBWR2P48146 333 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 GTF2A1P52655 376 aaPredicted RBP11.58□□□□□ -0.56
LIG1-218ENST00000599322 SCN1BQ07699 218 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 KLRD1Q13241 179 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 ZNF146Q15072 292 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 OR2G6Q5TZ20 316 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 PIP4P2Q8N4L2 257 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 DTX3Q8N9I9 347 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 CHST4Q8NCG5 386 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 BPIFB6Q8NFQ5 453 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 SGMS2Q8NHU3 365 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 THRSPQ92748 146 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 SMIM19Q96E16 107 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 ZNF714Q96N38 554 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 SPACA5Q96QH8 159 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 ZNF649Q9BS31 505 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 CHIAQ9BZP6 476 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 FAM192AQ9GZU8 254 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 PAK1IP1Q9NWT1 392 aaPredicted RBP11.58□□□□□ -0.56
LIG1-218ENST00000599322 ERGIC3Q9Y282 383 aa11.58□□□□□ -0.56
LIG1-218ENST00000599322 F8VVB4 439 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 F8VWA3 439 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 SIRPB1O00241 398 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 DEGS1O15121 323 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 ZNF737O75373 536 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 KDM4BO94953 1096 aa11.57□□□□□ -0.56
LIG1-218ENST00000599322 IGHV4-59P01825 116 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms