RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 HIST1H1DP16402 221 aaKnown RBP13.02□□□□□ -0.33
UPF1-206ENST00000598471 FUT3P21217 361 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PRSS3P35030 304 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PMELP40967 661 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 DCTN2Q13561 401 aaKnown RBP13.02□□□□□ -0.33
UPF1-206ENST00000598471 ZNF146Q15072 292 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 CDNFQ49AH0 187 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 NKAPLQ5M9Q1 402 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 TRIQKQ629K1 86 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 ZNF787Q6DD87 383 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 C16orf87Q6PH81 154 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 OR8H2Q8N162 312 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 Q8N402 240 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 GCSAMQ8N6F7 178 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 BOLLQ8N9W6 283 aaKnown RBP13.02□□□□□ -0.33
UPF1-206ENST00000598471 ABHD1Q96SE0 405 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 AUNIPQ9H7T9 357 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PALMDQ9NP74 551 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PLEKHJ1Q9NW61 149 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 HSF4Q9ULV5 492 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 PLEKHA6Q9Y2H5 1048 aa13.02□□□□□ -0.33
UPF1-206ENST00000598471 ROS1P08922 2347 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 FOXI3A8MTJ6 420 aaPredicted RBP13.01□□□□□ -0.33
UPF1-206ENST00000598471 SERPINE3A8MV23 424 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 SULT1C2O00338 296 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 SH2D1BO14796 132 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 WNT9BO14905 357 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 LHBP01229 141 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 HLA-DQB1P01920 261 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 ZNF44P15621 663 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 CHATP28329 748 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 INPP1P49441 399 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 PNLIPRP3Q17RR3 467 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 HFEQ30201 348 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 ZNF260Q3ZCT1 412 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 ATAD3CQ5T2N8 411 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 FCAMRQ8WWV6 532 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 C14orf79Q96F83 325 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 ARHGAP5-AS1Q96IT6 56 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 PECRQ9BY49 303 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 CXorf56Q9H5V9 222 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 IFT22Q9H7X7 185 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 PLEKHF2Q9H8W4 249 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 SCPEP1Q9HB40 452 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 TMEM106BQ9NUM4 274 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 NLKQ9UBE8 527 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 IL36RNQ9UBH0 155 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 LRRK2Q5S007 2527 aa13.01□□□□□ -0.33
UPF1-206ENST00000598471 GABARAPH6UMI1 98 aa13□□□□□ -0.33
UPF1-206ENST00000598471 MFNGO00587 321 aa13□□□□□ -0.33
UPF1-206ENST00000598471 DEGS1O15121 323 aa13□□□□□ -0.33
UPF1-206ENST00000598471 GSTZ1O43708 216 aaPredicted RBP13□□□□□ -0.33
UPF1-206ENST00000598471 HAND1O96004 215 aa13□□□□□ -0.33
UPF1-206ENST00000598471 CYB5R3P00387 301 aaPredicted RBP13□□□□□ -0.33
UPF1-206ENST00000598471 HPXP02790 462 aa13□□□□□ -0.33
UPF1-206ENST00000598471 GLAP06280 429 aa13□□□□□ -0.33
UPF1-206ENST00000598471 GNB3P16520 340 aa13□□□□□ -0.33
UPF1-206ENST00000598471 EGR1P18146 543 aa13□□□□□ -0.33
UPF1-206ENST00000598471 CD80P33681 288 aa13□□□□□ -0.33
UPF1-206ENST00000598471 TMEM50BP56557 158 aa13□□□□□ -0.33
UPF1-206ENST00000598471 GNG2P59768 71 aa13□□□□□ -0.33
UPF1-206ENST00000598471 MRPS11P82912 194 aaKnown RBP13□□□□□ -0.33
UPF1-206ENST00000598471 MRPS15P82914 257 aaKnown RBP13□□□□□ -0.33
UPF1-206ENST00000598471 SCN1BQ07699 218 aa13□□□□□ -0.33
UPF1-206ENST00000598471 ARFRP1Q13795 201 aa13□□□□□ -0.33
UPF1-206ENST00000598471 PLAC9Q5JTB6 97 aa13□□□□□ -0.33
UPF1-206ENST00000598471 SMIM4Q8WVI0 70 aa13□□□□□ -0.33
UPF1-206ENST00000598471 CCL17Q92583 94 aa13□□□□□ -0.33
UPF1-206ENST00000598471 WDR13Q9H1Z4 485 aa13□□□□□ -0.33
UPF1-206ENST00000598471 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13□□□□□ -0.33
UPF1-206ENST00000598471 DLL4Q9NR61 685 aa13□□□□□ -0.33
UPF1-206ENST00000598471 TREM2Q9NZC2 230 aa13□□□□□ -0.33
UPF1-206ENST00000598471 OR14J1Q9UGF5 321 aa13□□□□□ -0.33
UPF1-206ENST00000598471 WIPI2Q9Y4P8 454 aa13□□□□□ -0.33
UPF1-206ENST00000598471 ABCA4P78363 2273 aa13□□□□□ -0.33
UPF1-206ENST00000598471 SPTAN1Q13813 2472 aaKnown RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 PKDREJQ9NTG1 2253 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 TMEM235A6NFC5 223 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 CYSRT1A8MQ03 144 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 MCRIP1C9JLW8 97 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 TMEM178BH3BS89 294 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 CA11O75493 328 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 UPK1BO75841 260 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 LPLP06858 475 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 MELTFP08582 738 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 MUC1P15941 1255 aaPredicted RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 DUSP1P28562 367 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 SSTR2P30874 369 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 RBM39Q14498 530 aaKnown RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 MICBQ29980 383 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 HACD4Q5VWC8 232 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 C6orf201Q7Z4U5 140 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 NEK7Q8TDX7 302 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 ZFAND2BQ8WV99 257 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 RDH5Q92781 318 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 CCL19Q99731 98 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 ZMAT3Q9HA38 289 aaKnown RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 SEBOXQ9HB31 216 aaPredicted RBP12.99□□□□□ -0.33
UPF1-206ENST00000598471 ABCB10Q9NRK6 738 aa12.99□□□□□ -0.33
UPF1-206ENST00000598471 RCC2Q9P258 522 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms