RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MEIOCA2RUB1 952 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 CLPSL1A2RUU4 121 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 FAM181BA6NEQ2 426 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 C17orf98A8MV24 154 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 VGLL3A8MV65 326 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 SULT1B1O43704 296 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 ZNF737O75373 536 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 APOL3O95236 402 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 CSN2P05814 226 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 PIPP12273 146 aaPredicted RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 MDKP21741 143 aaPredicted RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 KCNJ3P48549 501 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 RAG2P55895 527 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 TAS2R43P59537 309 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 HOXA4Q00056 320 aaPredicted RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 ZNF691Q5VV52 312 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 ELP2Q6IA86 826 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 C17orf107Q6ZR85 190 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 CDH26Q8IXH8 852 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 ASCC1Q8N9N2 400 aaKnown RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 PXT1Q8NFP0 134 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 OR52I1Q8NGK6 324 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 OR52N1Q8NH53 320 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 GPR148Q8TDV2 347 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 TAF15Q92804 592 aaKnown RBP eCLIP8.58□□□□□ -1.04
LIG3-212ENST00000590181 EMG1Q92979 244 aaKnown RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 ADAT3Q96EY9 351 aaPredicted RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 CHIAQ9BZP6 476 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 DCLRE1BQ9H816 532 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 HMG20AQ9NP66 347 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 SIRT7Q9NRC8 400 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 BABAM2Q9NXR7 383 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 CNOT2Q9NZN8 540 aaKnown RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 OR14J1Q9UGF5 321 aa8.58□□□□□ -1.04
LIG3-212ENST00000590181 DIMT1Q9UNQ2 313 aaKnown RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 UBE2J1Q9Y385 318 aaPredicted RBP8.58□□□□□ -1.04
LIG3-212ENST00000590181 IGKV1-27A0A075B6S5 117 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 A0A1B0GW55 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 EFCAB10A6NFE3 127 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 A6NIN4 97 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 H0YJX3 145 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 CASQ2O14958 399 aaPredicted RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 ZNF780AO75290 641 aaPredicted RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 TSPAN9O75954 239 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 KDM4BO94953 1096 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 ZFPL1O95159 310 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 HAND1O96004 215 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 CD1AP06126 327 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L2P0CJ85 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L3P0CJ86 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L4P0CJ87 422 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L5P0CJ88 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L6P0CJ89 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L7P0CJ90 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 RAB3AP20336 220 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 SAA4P35542 130 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 RANBP1P43487 201 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 MTNR1BP49286 362 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DYNLT3P51808 116 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 ARHGDIBP52566 201 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 NANOS3P60323 173 aaKnown RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 PAX5Q02548 391 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 COL10A1Q03692 680 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 KISS1Q15726 138 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 OLFML2AQ68BL7 652 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 ZNF529Q6P280 563 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4L9Q6RFH8 374 aaPredicted RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 RTN4RL2Q86UN3 420 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 RDH10Q8IZV5 341 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 OR11H6Q8NGC7 330 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 CORO2AQ92828 525 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 TMEM80Q96HE8 168 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 AJUBAQ96IF1 538 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 ZNF649Q9BS31 505 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 GAL3ST2Q9H3Q3 398 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 RANBP3Q9H6Z4 567 aaPredicted RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 PLCXD1Q9NUJ7 323 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 TAS2R3Q9NYW6 316 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.57□□□□□ -1.04
LIG3-212ENST00000590181 DUX4Q9UBX2 424 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 PITPNC1Q9UKF7 332 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 MYRFQ9Y2G1 1151 aa8.57□□□□□ -1.04
LIG3-212ENST00000590181 IGKV1-9A0A0C4DH69 117 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 FAM90A8PA6NJQ4 464 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 TIMM23O14925 209 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 OGG1O15527 345 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 ANGPTL7O43827 346 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 GPR137BO60478 399 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 WBP4O75554 376 aaKnown RBP8.56□□□□□ -1.04
LIG3-212ENST00000590181 GPX5O75715 221 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 CLPXO76031 633 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 LIMS3P0CW19 117 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 LIMS4P0CW20 117 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 SELLP14151 372 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 GPR176Q14439 515 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 LRRC75BQ2VPJ9 315 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 MINOS1Q5TGZ0 78 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 RNLSQ5VYX0 342 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 RUSC1-AS1Q66K80 236 aa8.56□□□□□ -1.04
LIG3-212ENST00000590181 LINC00596Q86U02 117 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms