RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TMEM210A6NLX4 147 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 F5H5P2 479 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 GOSR2O14653 212 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 AGFG2O95081 481 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 DUS4LO95620 317 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 CECR9P0C854 216 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 C4BPBP20851 252 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 CD34P28906 385 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 OPRM1P35372 400 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 TDGF1P3P51864 188 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 IL13RA1P78552 427 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 NDUFA5Q16718 116 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 LAMTOR1Q6IAA8 161 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 C3P1Q6ZMU1 363 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 OR13G1Q8NGZ3 307 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 MITD1Q8WV92 249 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 GTF3AQ92664 365 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 MARS2Q96GW9 593 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 TMPRSS13Q9BYE2 586 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 CHIAQ9BZP6 476 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 PIGMQ9H3S5 423 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 ZNF442Q9H7R0 627 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 ZNF286AQ9HBT8 521 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 PLSCR3Q9NRY6 295 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 RCC2Q9P258 522 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 OSGIN2Q9Y236 505 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 SLC25A15Q9Y619 301 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 MSTNO14793 375 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 LILRA1O75019 489 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 HLA-GP17693 338 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 PSG7Q13046 419 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 ZNF718Q3SXZ3 478 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 Q6ZS49 121 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 NCCRP1Q6ZVX7 275 aaPredicted RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 GRPEL2Q8TAA5 225 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 KLF14Q8TD94 323 aaPredicted RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 EXTL1Q92935 676 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 CCDC120Q96HB5 630 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 USB1Q9BQ65 265 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 ADAT1Q9BUB4 502 aaKnown RBP12.13□□□□□ -0.47
LIG3-205ENST00000585941 BOLA1Q9Y3E2 137 aa12.13□□□□□ -0.47
LIG3-205ENST00000585941 CFAP47Q6ZTR5 3102 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 CEP295Q9C0D2 2601 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 ZFHX4Q86UP3 3567 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 ACAA1P09110 424 aaPredicted RBP12.12□□□□□ -0.47
LIG3-205ENST00000585941 GLI4P10075 376 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 AKR1C4P17516 323 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 KITLGP21583 273 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 NPY4RP50391 375 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 DHODHQ02127 395 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 PPP1R1AQ13522 171 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 AADACL3Q5VUY0 350 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 C17orf107Q6ZR85 190 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 SPERTQ8NA61 448 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 OR8G5Q8NG78 346 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 OR11H4Q8NGC9 324 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 MAFIPQ8WZ33 124 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 MUCL1Q96DR8 90 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 HDHD3Q9BSH5 251 aaPredicted RBP12.12□□□□□ -0.47
LIG3-205ENST00000585941 C1QTNF6Q9BXI9 259 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 RIMS4Q9H426 269 aaPredicted RBP12.12□□□□□ -0.47
LIG3-205ENST00000585941 IFT22Q9H7X7 185 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 TMEM100Q9NV29 134 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 OPN4Q9UHM6 478 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 ESPL1Q14674 2120 aa12.12□□□□□ -0.47
LIG3-205ENST00000585941 A0A0B4J2A0 478 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 IGHV2OR16-5A0A0B4J2B6 119 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 IGHV1-18A0A0C4DH31 117 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 POM121CA8CG34 1229 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 MCRIP1C9JLW8 97 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 SDCBPO00560 298 aaPredicted RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 SYNGR1O43759 233 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 OR5H8P0DN80 308 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 PRKACAP17612 351 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 GCH1P30793 250 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 H2BFSP57053 126 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 GMFBP60983 142 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 SRSF4Q08170 494 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 RBM39Q14498 530 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 OR8G1Q15617 311 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 MBNL2Q5VZF2 373 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 ZNF474Q6S9Z5 364 aaPredicted RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 DHRS11Q6UWP2 260 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 FAM58AQ8N1B3 248 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 CISD2Q8N5K1 135 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 Q8NA96 180 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 CLEC4MQ9H2X3 399 aaPredicted RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 FN3KRPQ9HA64 309 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 DECR2Q9NUI1 292 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 SHPKQ9UHJ6 478 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 TUBD1Q9UJT1 453 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 PURGQ9UJV8 347 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 C14orf166Q9Y224 244 aaKnown RBP12.11□□□□□ -0.47
LIG3-205ENST00000585941 SPEF1Q9Y4P9 236 aa12.11□□□□□ -0.47
LIG3-205ENST00000585941 IGKV1D-8A0A087WSZ0 117 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 G3V3Q6 166 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 PPP3CBP16298 524 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 VAMP1P23763 118 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 CALCRP30988 508 aa12.1□□□□□ -0.47
LIG3-205ENST00000585941 ERVS71-1P61550 626 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms