RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SLC6A1P30531 599 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 ETV1P50549 477 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 IL5RAQ01344 420 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 C2orf80Q0P641 193 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 LAMTOR4Q0VGL1 99 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 TOMM34Q15785 309 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CEACAM16Q2WEN9 425 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CDNFQ49AH0 187 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 HSP90AA4PQ58FG1 418 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 FAHD1Q6P587 224 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 TMEM144Q7Z5S9 345 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 MUC7Q8TAX7 377 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 LGALS14Q8TCE9 139 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 STACQ99469 402 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 TMED9Q9BVK6 235 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 MRPL20Q9BYC9 149 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 SHCBP1LQ9BZQ2 653 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 COA1Q9GZY4 146 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 ASB7Q9H672 318 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 LZTFL1Q9NQ48 299 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 TMEM38BQ9NVV0 291 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CYB5R1Q9UHQ9 305 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 CFL2Q9Y281 166 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 ORC6Q9Y5N6 252 aa1.86□□□□□ -2.11
SMCHD1-204ENST00000581226 IGLV10-54A0A075B6I4 117 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 C9JQL5 133 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 C3orf84H3BNL1 204 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 H7C2Y5 167 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 ENTPD6O75354 484 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 DHRS3O75911 302 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 RHOCP08134 193 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 HADHBP55084 474 aaKnown RBP1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 FOXA1P55317 472 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 RPL10AP62906 217 aaKnown RBP1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 PMVKQ15126 192 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 ELOCQ15369 112 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 GUSBP1Q15486 140 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 KRTAP25-1Q3LHN0 102 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 KCTD16Q68DU8 428 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 ATPAF2Q8N5M1 289 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 OR5H2Q8NGV7 314 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 OR6N2Q8NGY6 317 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 NT5CQ8TCD5 201 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 FXYD5Q96DB9 178 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 PPP1R36Q96LQ0 422 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 SIKE1Q9BRV8 207 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 THTPAQ9BU02 230 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 PRORYQ9H606 182 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 ACOT13Q9NPJ3 140 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 NLE1Q9NVX2 485 aaPredicted RBP1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 POFUT2Q9Y2G5 429 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 TRAPPC1Q9Y5R8 145 aa1.85□□□□□ -2.11
SMCHD1-204ENST00000581226 FBN1P35555 2871 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 SPATA31E1Q6ZUB1 1445 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 MYO16Q9Y6X6 1858 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 C17orf51A8MQB3 221 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 S100A9P06702 114 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 SNRPAP09012 282 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 STK38Q15208 465 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 VAMP3Q15836 100 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 CLLU1OSQ5K130 101 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 CLEC19AQ6UXS0 136 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 FAM231DQ6ZW35 169 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 NELFCDQ8IXH7 590 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 ZNF555Q8NEP9 628 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 ZNF75AQ96N20 296 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 XKR8Q9H6D3 395 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 HAUS4Q9H6D7 363 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 C6orf50Q9HD87 102 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 C12orf4Q9NQ89 552 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 AGPAT3Q9NRZ7 376 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 RBM12B-AS1Q9P1G2 102 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 PRO0628Q9UI54 55 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 NXT1Q9UKK6 140 aaKnown RBP1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 SLC7A11Q9UPY5 501 aa1.84□□□□□ -2.11
SMCHD1-204ENST00000581226 A0A1B0GXF2 115 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 SDHAF1A6NFY7 115 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 PSMD11O00231 422 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 ZNF593O00488 134 aaPredicted RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 FFAR1O14842 300 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 RGS5O15539 181 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 RNF113AO15541 343 aaKnown RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 M6PRP20645 277 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 NUP62P37198 522 aaPredicted RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 LGALSLQ3ZCW2 172 aaPredicted RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 SYT6Q5T7P8 510 aaPredicted RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 Q6ZT83 130 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 TMEM25Q86YD3 366 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 EIF4E3Q8N5X7 224 aaKnown RBP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 CDRT4Q8N9R6 151 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 CDKL2Q92772 493 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 METTL26Q96S19 204 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 SLC38A1Q9H2H9 487 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 PLEKHA1Q9HB21 404 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 RBM22Q9NW64 420 aaKnown RBP eCLIP1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 ANXA10Q9UJ72 324 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 AP3M1Q9Y2T2 418 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 ICOSQ9Y6W8 199 aa1.83□□□□□ -2.12
SMCHD1-204ENST00000581226 MGAT4DA6NG13 374 aa1.82□□□□□ -2.12
SMCHD1-204ENST00000581226 FAM25EA8MYX2 175 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms