RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ZNF701Q9NV72 531 aaPredicted RBP9.03□□□□□ -0.96
SS18-213ENST00000579640 TREM2Q9NZC2 230 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 NLKQ9UBE8 527 aa9.03□□□□□ -0.96
SS18-213ENST00000579640 PPIAL4EA0A075B759 164 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 A0A0A6YYD4 124 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 TRAV38-1A0A0B4J264 116 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 FABP12A6NFH5 140 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 OOEPA6NGQ2 149 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 CLDN25C9JDP6 229 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 PPIAL4DF5H284 164 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.02□□□□□ -0.97
SS18-213ENST00000579640 LGALS8O00214 317 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 SH2D1BO14796 132 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 GEMIN2O14893 280 aaKnown RBP9.02□□□□□ -0.97
SS18-213ENST00000579640 WNT9BO14905 357 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 RP2O75695 350 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 PPIAL4FP0DN26 164 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 GABRR1P24046 479 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 CDK2P24941 298 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 COL8A2P25067 703 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 GMFBP60983 142 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 KCNJ8Q15842 424 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 MICBQ29980 383 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 TMEM69Q5SWH9 247 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 PEG10Q86TG7 708 aaKnown RBP9.02□□□□□ -0.97
SS18-213ENST00000579640 BIVMQ86UB2 503 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 BOLLQ8N9W6 283 aaKnown RBP9.02□□□□□ -0.97
SS18-213ENST00000579640 CHST4Q8NCG5 386 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 YIPF5Q969M3 257 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 NEDD4LQ96PU5 975 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 CHODLQ9H9P2 273 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 HSF4Q9ULV5 492 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 WIPI2Q9Y4P8 454 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 PPIAL4AQ9Y536 164 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 CACNG2Q9Y698 323 aa9.02□□□□□ -0.97
SS18-213ENST00000579640 FOXI3A8MTJ6 420 aaPredicted RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 PDCD6O75340 191 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 OR7C1O76099 320 aaPredicted RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 HAND1O96004 215 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 GLAP06280 429 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 FUT3P21217 361 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 BLVRBP30043 206 aaPredicted RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 CD80P33681 288 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 SNU13P55769 128 aaKnown RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 TMEM33P57088 247 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 PITPNAQ00169 270 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 IKZF1Q13422 519 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 PYHIN1Q6K0P9 492 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 Q6ZTK2 550 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 TGIF2LYQ8IUE0 185 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 RAB3CQ96E17 227 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 TIMD4Q96H15 378 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 SOSTQ9BQB4 213 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 WDR12Q9GZL7 423 aaKnown RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 DNTTIP1Q9H147 329 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 AKIP1Q9NQ31 210 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 RCC2Q9P258 522 aaKnown RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 IL36RNQ9UBH0 155 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 TRAV18A0A075B6X5 111 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 OR2AT4A6NND4 320 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 DEGS1O15121 323 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 SOCS1O15524 211 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 NDUFA2O43678 99 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 GSTP1P09211 210 aaKnown RBP9.01□□□□□ -0.97
SS18-213ENST00000579640 PSG2P11465 335 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 TAS2R20P59543 309 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 IL18Q14116 193 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 MOGAT2Q3SYC2 334 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 Q6P435 159 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 FAM131AQ6UXB0 335 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 RAB1CQ92928 201 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 GSX2Q9BZM3 304 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 LIME1Q9H400 295 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.01□□□□□ -0.97
SS18-213ENST00000579640 PLEKHJ1Q9NW61 149 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 DCAF16Q9NXF7 216 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 OR14J1Q9UGF5 321 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 V9GYH0 126 aa9.01□□□□□ -0.97
SS18-213ENST00000579640 RFPL4AA6NLU0 287 aa9□□□□□ -0.97
SS18-213ENST00000579640 SERPINE3A8MV23 424 aa9□□□□□ -0.97
SS18-213ENST00000579640 C3orf80F5H4A9 247 aa9□□□□□ -0.97
SS18-213ENST00000579640 RFPL4AL1F8VTS6 287 aa9□□□□□ -0.97
SS18-213ENST00000579640 OR2H2O95918 312 aa9□□□□□ -0.97
SS18-213ENST00000579640 IGHV4-39P01824 125 aa9□□□□□ -0.97
SS18-213ENST00000579640 INHBBP09529 407 aa9□□□□□ -0.97
SS18-213ENST00000579640 CSF3P09919 207 aa9□□□□□ -0.97
SS18-213ENST00000579640 ZNF44P15621 663 aa9□□□□□ -0.97
SS18-213ENST00000579640 HIST1H1DP16402 221 aaKnown RBP9□□□□□ -0.97
SS18-213ENST00000579640 LMO1P25800 156 aa9□□□□□ -0.97
SS18-213ENST00000579640 CHATP28329 748 aa9□□□□□ -0.97
SS18-213ENST00000579640 DUSP1P28562 367 aa9□□□□□ -0.97
SS18-213ENST00000579640 PRDX2P32119 198 aa9□□□□□ -0.97
SS18-213ENST00000579640 PTH2RP49190 550 aa9□□□□□ -0.97
SS18-213ENST00000579640 TMEM50BP56557 158 aa9□□□□□ -0.97
SS18-213ENST00000579640 BTG1P62324 171 aa9□□□□□ -0.97
SS18-213ENST00000579640 MRPS10P82664 201 aaKnown RBP9□□□□□ -0.97
SS18-213ENST00000579640 RBM39Q14498 530 aaKnown RBP9□□□□□ -0.97
SS18-213ENST00000579640 ZNF846Q147U1 533 aa9□□□□□ -0.97
SS18-213ENST00000579640 PNLIPRP3Q17RR3 467 aa9□□□□□ -0.97
SS18-213ENST00000579640 FAM201AQ5SY85 155 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms