RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TPPPO94811 219 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 RBMY1A1P0DJD3 496 aaKnown RBP12.24□□□□□ -0.45
VPS53-218ENST00000575207 KITP10721 976 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 HSD11B1P28845 292 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 SLC18A1P54219 525 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 ZNF121P58317 390 aaPredicted RBP12.24□□□□□ -0.45
VPS53-218ENST00000575207 FXYD6P3P58550 94 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 STX1BP61266 288 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 VMACQ2NL98 169 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 LYPD4Q6UWN0 246 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 Q8N6K4 173 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 OR5A2Q8NGI9 324 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 OR4K13Q8NH42 304 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 GAL3ST2Q9H3Q3 398 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 KAT8Q9H7Z6 458 aaKnown RBP12.24□□□□□ -0.45
VPS53-218ENST00000575207 BRD7Q9NPI1 651 aa12.24□□□□□ -0.45
VPS53-218ENST00000575207 UBE2J1Q9Y385 318 aaPredicted RBP12.24□□□□□ -0.45
VPS53-218ENST00000575207 A0A087X0M5 115 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 A0A1B0GX30 115 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 FAM90A10PA6NDY2 464 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 TVP23AA6NH52 213 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 FAM183AA6NL82 134 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 ARPC1BO15143 372 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 MPZL2O60487 215 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 APOC1P02654 83 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 LGALS1P09382 135 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 HIST1H1CP16403 213 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 YAP1P46937 504 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 LCN12Q6JVE5 192 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 RRM2BQ7LG56 351 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 DEFB125Q8N687 156 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 EIF1ADQ8N9N8 165 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 OR52L1Q8NGH7 329 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 FLYWCH2Q96CP2 140 aaKnown RBP12.23□□□□□ -0.45
VPS53-218ENST00000575207 PGAM5Q96HS1 289 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 SNX22Q96L94 193 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 DNAJC27Q9NZQ0 273 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 CCDC167Q9P0B6 97 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 FBXO7Q9Y3I1 522 aa12.23□□□□□ -0.45
VPS53-218ENST00000575207 J3QT63 122 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 SHOXO15266 292 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 OR8H3Q8N146 312 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 Q8N402 240 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 ZBTB9Q96C00 473 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 RSRC1Q96IZ7 334 aaKnown RBP12.22□□□□□ -0.45
VPS53-218ENST00000575207 EAF1Q96JC9 268 aaPredicted RBP12.22□□□□□ -0.45
VPS53-218ENST00000575207 SRD5A3Q9H8P0 318 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 PLSCR3Q9NRY6 295 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 LGALS13Q9UHV8 139 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 POLDIP2Q9Y2S7 368 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 COMMD3-BMI1R4GMX3 469 aa12.22□□□□□ -0.45
VPS53-218ENST00000575207 TMEM82A0PJX8 343 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 HSPB1P04792 205 aaKnown RBP12.21□□□□□ -0.45
VPS53-218ENST00000575207 PYCR1P32322 319 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 HAAOP46952 286 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 GLIPR1P48060 266 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 MRPL19P49406 292 aaKnown RBP12.21□□□□□ -0.45
VPS53-218ENST00000575207 CD81P60033 236 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 GALEQ14376 348 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 WHAMMP3Q1A5X7 153 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 KRT71Q3SY84 523 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 OR10A6Q8NH74 314 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 NEURL2Q9BR09 285 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 PLEKHA1Q9HB21 404 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 THAP1Q9NVV9 213 aa12.21□□□□□ -0.45
VPS53-218ENST00000575207 AMMECR1Q9Y4X0 333 aaPredicted RBP12.21□□□□□ -0.45
VPS53-218ENST00000575207 FAT1Q14517 4588 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 J3KTA2 159 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 FFAR1O14842 300 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 ARPC3O15145 178 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 IFNA14P01570 189 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 PEX2P28328 305 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 SOX6P35712 828 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 RAB7AP51149 207 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 GRK1Q15835 563 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 IL34Q6ZMJ4 242 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 MREGQ8N565 214 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 ZNF645Q8N7E2 425 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 PROKR2Q8NFJ6 384 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 FAM81AQ8TBF8 368 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 RASL11BQ9BPW5 248 aa12.2□□□□□ -0.46
VPS53-218ENST00000575207 MRM2Q9UI43 246 aaKnown RBP12.2□□□□□ -0.46
VPS53-218ENST00000575207 DHRS12A0PJE2 317 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 MSGN1A6NI15 193 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 ERVK11-1P61568 191 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 RAB40BQ12829 278 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 DIAPH2-AS1Q14236 149 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 UTF1Q5T230 341 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 PLCXD3Q63HM9 321 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 MOB3CQ70IA8 216 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 ZNF573Q86YE8 665 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 OR9G1Q8NH87 305 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 TPD52L3Q96J77 140 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 CGREF1Q99674 301 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 CHST6Q9GZX3 395 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 SNX13Q9Y5W8 968 aa12.19□□□□□ -0.46
VPS53-218ENST00000575207 TRGV10A0A0A0MS01 117 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 IZUMO1RA6ND01 250 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 C16orf90A8MZG2 172 aa12.18□□□□□ -0.46
VPS53-218ENST00000575207 G3V318 75 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms