RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PIGBOS1A0A0B4J2F0 54 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 A0A1W2PR80 420 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 UBE2QL1A1L167 161 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 TMEM235A6NFC5 223 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 ZNHIT1O43257 154 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 SPRY1O43609 319 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 CD3DP04234 171 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CELA3BP08861 270 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 GABRR1P24046 479 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CHATP28329 748 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 GRNP28799 593 aaKnown RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 CFHR2P36980 270 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CD200P41217 278 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 FABP6P51161 128 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 TAS2R31P59538 309 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 UBE2MP61081 183 aaKnown RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 NKX6-1P78426 367 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 PLA2G7Q13093 441 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 SURF2Q15527 256 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 TSC22D1Q15714 1073 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 TATDN3Q17R31 274 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 MOGAT2Q3SYC2 334 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CHRFAM7AQ494W8 412 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 SHEQ5VZ18 495 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 FAHD2BQ6P2I3 314 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 HAGHLQ6PII5 290 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 CRIP3Q6Q6R5 217 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 Q6ZS49 121 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CALHM1Q8IU99 346 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CADM3Q8N126 398 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 FAM58AQ8N1B3 248 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 BPIFB2Q8N4F0 458 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 RPRMLQ8N4K4 120 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 ZNF808Q8N4W9 903 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 ZDHHC22Q8N966 263 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 BHLHE23Q8NDY6 225 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 OR5H2Q8NGV7 314 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 OR10Z1Q8NGY1 313 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 FAHD2AQ96GK7 314 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 CMSS1Q9BQ75 279 aaKnown RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 TRAF4Q9BUZ4 470 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 C1QTNF6Q9BXI9 259 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 TLNRD1Q9H1K6 362 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 MMP28Q9H239 520 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 KCNJ16Q9NPI9 418 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 NUDT15Q9NV35 164 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 ERRFI1Q9UJM3 462 aaPredicted RBP6.8□□□□□ -1.32
VPS39-213ENST00000570062 PIEZO2Q9H5I5 2752 aa6.8□□□□□ -1.32
VPS39-213ENST00000570062 TNRC6AQ8NDV7 1962 aaKnown RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 ZNF407Q9C0G0 2248 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 IGLV3-9A0A075B6K5 115 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 KIR2DS1A0A191URI9 304 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 C7orf66A4D0T2 115 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 IFNL4K9M1U5 179 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SH2D1BO14796 132 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 ANGPTL7O43827 346 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 CCNKO75909 580 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 OR7C1O76099 320 aaPredicted RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 PTBP3O95758 552 aaKnown RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 MT-ND4P03905 459 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 AMY2AP04746 511 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SFTPBP07988 381 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SPNP16150 400 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 AMY2BP19961 511 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 ANOS1P23352 680 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 BTCP35070 178 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 KIR2DS4P43632 304 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SNU13P55769 128 aaKnown RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 TSPAN5P62079 268 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 KIR2DS1Q14954 304 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 ZNF146Q15072 292 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 KCNJ8Q15842 424 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 TAF9Q16594 264 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 RNASE12Q5GAN4 147 aaKnown RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 PLAC9Q5JTB6 97 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SPATA46Q5T0L3 261 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 CD276Q5ZPR3 534 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 SFRP4Q6FHJ7 346 aaPredicted RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 LPCAT3Q6P1A2 487 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 BIVMQ86UB2 503 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 POC1AQ8NBT0 407 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 RELL2Q8NC24 303 aaPredicted RBP6.79□□□□□ -1.32
VPS39-213ENST00000570062 GALNT11Q8NCW6 608 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 BEST4Q8NFU0 473 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 OR5AP2Q8NGF4 316 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 OR4C16Q8NGL9 310 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 TERB2Q8NHR7 220 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 PPP1R35Q8TAP8 253 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 CA5BP1Q8WTZ4 195 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 UPRTQ96BW1 309 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 NEURL2Q9BR09 285 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 NICN1Q9BSH3 213 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 C20orf85Q9H1P6 137 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 MED28Q9H204 178 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 OR51B6Q9H340 312 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 POFUT1Q9H488 388 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 FN3KRPQ9HA64 309 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 ZNF286AQ9HBT8 521 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 C12orf4Q9NQ89 552 aa6.79□□□□□ -1.32
VPS39-213ENST00000570062 NECAP2Q9NVZ3 263 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms