RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LDOC1O95751 146 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 HPRT1P00492 218 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 KLK1P06870 262 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 OCMP0CE72 109 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 RD3LP0DJH9 198 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CBR1P16152 277 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TEAD1P28347 426 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 EVI2BP34910 448 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 PFN2P35080 140 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 FUSP35637 526 aaKnown RBP eCLIP0.91□□□□□ -2.26
VPS35-207ENST00000568191 RFC3P40938 356 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 PPP1R2P41236 205 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 MAGEA6P43360 314 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CDC34P49427 236 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 EMP2P54851 167 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 MLF1P58340 268 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 ATP6V0D1P61421 351 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 B2MP61769 119 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TSPAN5P62079 268 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 BASP1P80723 227 aaKnown RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 KDSRQ06136 332 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 ZNF33AQ06730 810 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 FADDQ13158 208 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TSC22D1Q15714 1073 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 GABRA6Q16445 453 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TNXAQ16473 311 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 RGS21Q2M5E4 152 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TRMT5Q32P41 509 aaKnown RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 KRTAP25-1Q3LHN0 102 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 COQ5Q5HYK3 327 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SAPCD1Q5SSQ6 148 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TPRG1LQ5T0D9 272 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 AMMECR1LQ6DCA0 310 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 PPP1R2P3Q6NXS1 205 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SPESP1Q6UW49 350 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CD300LGQ6UXG3 332 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 PLEKHG7Q6ZR37 379 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 OR2W3Q7Z3T1 314 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 MTERF4Q7Z6M4 381 aaKnown RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 SETD3Q86TU7 594 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 HORMAD1Q86X24 394 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CRLF3Q8IUI8 442 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 BBS7Q8IWZ6 715 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 BOD1L2Q8IYS8 172 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 LRRC34Q8IZ02 419 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 KIF2BQ8N4N8 673 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SLC26A10Q8NG04 563 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 OR4C13Q8NGP0 309 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 LGALS14Q8TCE9 139 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 DCAKDQ8WVC6 231 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 BAALCQ8WXS3 180 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 RERGQ96A58 199 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 CENPNQ96H22 339 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 IGF2BP2-AS1Q96M15 143 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 ZNF251Q9BRH9 671 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 UTP23Q9BRU9 249 aaKnown RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 SRRQ9GZT4 340 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CHRNA10Q9GZZ6 450 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SLC38A1Q9H2H9 487 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 VCX3BQ9H321 246 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 WDR55Q9H6Y2 383 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 TRIM45Q9H8W5 580 aaPredicted RBP0.91□□□□□ -2.26
VPS35-207ENST00000568191 WDR54Q9H977 334 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 VCX3AQ9NNX9 186 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 TREX1Q9NSU2 369 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 ATPIF1Q9UII2 106 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 SAR1BQ9Y6B6 198 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 V9GYY9 64 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 MAP3K5Q99683 1374 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 PLB1Q6P1J6 1458 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 VWA8A3KMH1 1905 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 CACNA1GO43497 2377 aa0.91□□□□□ -2.26
VPS35-207ENST00000568191 RAD50Q92878 1312 aa0.9□□□□□ -2.26
VPS35-207ENST00000568191 IGLV10-54A0A075B6I4 117 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 A0A1B0GTI1 187 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA8IPA6NC78 632 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 A6NDN8 102 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TVP23AA6NH52 213 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 CENPBD1B2RD01 187 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 ANKRD65E5RJM6 399 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 H3BN98 237 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 K7EN84 100 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 hCG_2039718K7EN88 272 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 M0QXV9 152 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 GPR171O14626 319 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 PRMT5O14744 637 aaPredicted RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 SGCEO43556 437 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 RAD1O60671 282 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 MPDU1O75352 247 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 PSIP1O75475 530 aaKnown RBP0.9□□□□□ -2.27
VPS35-207ENST00000568191 ADAP1O75689 374 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TRAPPC6AO75865 159 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TNFAIP8O95379 198 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 PLEKHA8P1O95397 391 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 TDP2O95551 362 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 GP1BAP07359 652 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 SERPINA6P08185 405 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 SLC35E2BP0CK96 405 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 MLNP12872 115 aa0.9□□□□□ -2.27
VPS35-207ENST00000568191 SYT1P21579 422 aa0.9□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms