RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NPBWR2P48146 333 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 DYNLT3P51808 116 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ATP1B3P54709 279 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ACTA2P62736 377 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ACTG2P63267 376 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ACTC1P68032 377 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ACTA1P68133 377 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 DYNC1I2Q13409 638 aaKnown RBP12.96□□□□□ -0.34
CLN3-229ENST00000567963 EDDM3AQ14507 147 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 TP53I3Q53FA7 332 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 TMEM219Q86XT9 240 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 TPRX1Q8N7U7 411 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 ADAT3Q96EY9 351 aaPredicted RBP12.96□□□□□ -0.34
CLN3-229ENST00000567963 CHST6Q9GZX3 395 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 RBFOX1Q9NWB1 397 aaKnown RBP12.96□□□□□ -0.34
CLN3-229ENST00000567963 LINC00312Q9Y6C7 94 aa12.96□□□□□ -0.34
CLN3-229ENST00000567963 TRBV2A0A0J9YWF9 115 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 ATP5HO75947 161 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 GABRR1P24046 479 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 OR12D2P58182 307 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 CDC42P60953 191 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 ZNF91Q05481 1191 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 ZNF146Q15072 292 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 GRK1Q15835 563 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 BEAN1Q3B7T3 259 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 TMEM244Q5VVB8 128 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 FAM220AQ7Z4H9 259 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 FAM58AQ8N1B3 248 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 ZNF676Q8N7Q3 588 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 OR2G2Q8NGZ5 317 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 TRUB1Q8WWH5 349 aaKnown RBP12.95□□□□□ -0.34
CLN3-229ENST00000567963 FRRS1LQ9P0K9 344 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 HILPDAQ9Y5L2 63 aa12.95□□□□□ -0.34
CLN3-229ENST00000567963 IGHV2-26A0A0B4J1V2 119 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 CYB5AP00167 134 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 ISG15P05161 165 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 CD28P10747 220 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 BCL3P20749 454 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 DUSP1P28562 367 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 MTCP1P56278 107 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 KPRPQ5T749 579 aaPredicted RBP12.94□□□□□ -0.34
CLN3-229ENST00000567963 SAMD5Q5TGI4 173 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 MINOS1Q5TGZ0 78 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 UTS2BQ765I0 119 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 KCTD20Q7Z5Y7 419 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 OR4S1Q8NGB4 309 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 WIPF2Q8TF74 440 aaPredicted RBP12.94□□□□□ -0.34
CLN3-229ENST00000567963 FGGYQ96C11 551 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 PRSS22Q9GZN4 317 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 SESN1Q9Y6P5 492 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 MINOS1-NBL1R4GNA1 71 aa12.94□□□□□ -0.34
CLN3-229ENST00000567963 J3QRE1 110 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 MGST3O14880 152 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 ENTPD6O75354 484 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 FBXO24O75426 580 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 CALCBP10092 127 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 JUNBP17275 347 aaPredicted RBP12.93□□□□□ -0.34
CLN3-229ENST00000567963 ATF1P18846 271 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 PRKACBP22694 351 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 AZGP1P25311 298 aaKnown RBP12.93□□□□□ -0.34
CLN3-229ENST00000567963 ERP29P30040 261 aaKnown RBP12.93□□□□□ -0.34
CLN3-229ENST00000567963 POU3F4P49335 361 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 BLCAPP62952 87 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 EMX1Q04741 257 aaPredicted RBP12.93□□□□□ -0.34
CLN3-229ENST00000567963 PDZK1IP1Q13113 114 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 SPIN3Q5JUX0 258 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 FDX2Q6P4F2 183 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 LHFPL2Q6ZUX7 228 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 LYG1Q8N1E2 194 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 WNT10AQ9GZT5 417 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 TMEM133Q9H2Q1 129 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 GLS2Q9UI32 602 aa12.93□□□□□ -0.34
CLN3-229ENST00000567963 SAC3D1A6NKF1 404 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 MMP23AO75900 390 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 PRKACAP17612 351 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 NANOS3P60323 173 aaKnown RBP12.92□□□□□ -0.34
CLN3-229ENST00000567963 SLC34A1Q06495 639 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 ZSCAN26Q16670 478 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 NSUN5P1Q3KNT7 163 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 SLC25A30Q5SVS4 291 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 Q6ZS46 218 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 ZBTB49Q6ZSB9 765 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 NDNFQ8TB73 568 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 HRASLS5Q96KN8 279 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 MBOAT4Q96T53 435 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 CLEC7AQ9BXN2 247 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 HMG20AQ9NP66 347 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 IMPAD1Q9NX62 359 aa12.92□□□□□ -0.34
CLN3-229ENST00000567963 UBE2J1Q9Y385 318 aaPredicted RBP12.92□□□□□ -0.34
CLN3-229ENST00000567963 DAPL1A0PJW8 107 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 FAM90A22PA8MWA6 464 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 F2RL2O00254 374 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 SH2D1BO14796 132 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 PEX14O75381 377 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 ZNF20P17024 532 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 OR3A1P47881 315 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 CCR9P51686 369 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 SNU13P55769 128 aaKnown RBP12.91□□□□□ -0.34
CLN3-229ENST00000567963 CCDC121Q6ZUS5 278 aa12.91□□□□□ -0.34
CLN3-229ENST00000567963 TRAPPC6BQ86SZ2 158 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms