RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TRRAPQ9Y4A5 3859 aa14.31□□□□□ -0.12
CLN3-217ENST00000565354 IGKV1D-17A0A075B6S4 117 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 PPIAL4CA0A0B4J2A2 164 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 A0A1B0GW55 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 MEGF11A6BM72 1044 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 J3QLI3 93 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 CCRL2O00421 344 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 ENSAO43768 121 aaKnown RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 KDM4BO94953 1096 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L2P0CJ85 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L3P0CJ86 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L4P0CJ87 422 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L5P0CJ88 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L6P0CJ89 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L7P0CJ90 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 CALCBP10092 127 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 CEBPDP49716 269 aaPredicted RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 ZP1P60852 638 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 RSU1Q15404 277 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4L9Q6RFH8 374 aaPredicted RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 UNQ9370/PRO34162Q6UXP9 181 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 NKAIN3Q8N8D7 197 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 RAB40AQ8WXH6 277 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 NKX3-1Q99801 234 aaPredicted RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 NUDT16L1Q9BRJ7 211 aaKnown RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 C7orf69Q9H7B7 122 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 RHOFQ9HBH0 211 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 MMP26Q9NRE1 261 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 DUX4Q9UBX2 424 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 ZNF222Q9UK12 451 aa14.3□□□□□ -0.12
CLN3-217ENST00000565354 POLR3KQ9Y2Y1 108 aaPredicted RBP14.3□□□□□ -0.12
CLN3-217ENST00000565354 A0A087WXM4 84 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 IGHV2-70DA0A0C4DH43 119 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 IGKV1-12A0A0C4DH73 117 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 F8VVB4 439 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 F8VWA3 439 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 GPR37O15354 613 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 PIN1P1O15428 100 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 ARL6IP5O75915 188 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 ECDO95905 644 aaPredicted RBP14.29□□□□□ -0.12
CLN3-217ENST00000565354 IGKV1D-12P01611 117 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 CSTBP04080 98 aaKnown RBP14.29□□□□□ -0.12
CLN3-217ENST00000565354 CHRM2P08172 466 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 SELLP14151 372 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 AMY2BP19961 511 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 OR3A4PP47883 348 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 BMXP51813 675 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 NEDD8Q15843 81 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 DGUOKQ16854 277 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 FAM27D1Q5T7N8 215 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 BTN2A1Q7KYR7 527 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 ZNF561Q8N587 486 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 TEX29Q8N6K0 151 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 CD177Q8N6Q3 437 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 ASCC1Q8N9N2 400 aaKnown RBP14.29□□□□□ -0.12
CLN3-217ENST00000565354 ZNRF1Q8ND25 227 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 PXT1Q8NFP0 134 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 TSPAN14Q8NG11 270 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 PHYHIPQ92561 330 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 GCDHQ92947 438 aaPredicted RBP14.29□□□□□ -0.12
CLN3-217ENST00000565354 SDSLQ96GA7 329 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 METTL9Q9H1A3 318 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 GSTK1Q9Y2Q3 226 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 INSIG2Q9Y5U4 225 aa14.29□□□□□ -0.12
CLN3-217ENST00000565354 TMEM89A2RUT3 159 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 MAGEA13PA6NCF6 341 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 HTR3BO95264 441 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 HAND1O96004 215 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 PTGFRP43088 359 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 MTNR1BP49286 362 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 COL10A1Q03692 680 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 SSX1Q16384 188 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 SPIN3Q5JUX0 258 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 GLT8D1Q68CQ7 371 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 MUL1Q969V5 352 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 HMG20AQ9NP66 347 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 EXOSC4Q9NPD3 245 aaKnown RBP14.28□□□□□ -0.12
CLN3-217ENST00000565354 PCDHB16Q9NRJ7 776 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 NDUFB11Q9NX14 153 aa14.28□□□□□ -0.12
CLN3-217ENST00000565354 SF3B6Q9Y3B4 125 aaKnown RBP14.28□□□□□ -0.12
CLN3-217ENST00000565354 C22orf46C9J442 243 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 SH2D1BO14796 132 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 SC5DO75845 299 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 CDRT1O95170 752 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 SFTPBP07988 381 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 UCHL1P09936 223 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 SRMP19623 302 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 DUSP1P28562 367 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 FABP5Q01469 135 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 SCGB2A2Q13296 93 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 C11orf91Q3C1V1 193 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 AWAT2Q6E213 333 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 CRIP3Q6Q6R5 217 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 TMEM91Q6ZNR0 172 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 CDH26Q8IXH8 852 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 FGFRL1Q8N441 504 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 OR10K1Q8NGX5 313 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 ZNF418Q8TF45 676 aaPredicted RBP14.27□□□□□ -0.13
CLN3-217ENST00000565354 FAM216AQ8WUB2 273 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 NR1H4Q96RI1 486 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms