RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ACTA2P62736 377 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 ACTG2P63267 376 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 ACTC1P68032 377 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 ACTA1P68133 377 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 DYNC1I2Q13409 638 aaKnown RBP13.76□□□□□ -0.21
CLN3-216ENST00000565316 EDDM3AQ14507 147 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 ZNF146Q15072 292 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 GRK1Q15835 563 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 NSUN5P1Q3KNT7 163 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 Q6ZPA2 131 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 Q6ZS46 218 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 AMIGO2Q86SJ2 522 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 FAM58AQ8N1B3 248 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 LYG1Q8N1E2 194 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 OR4S1Q8NGB4 309 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 OR8J1Q8NGP2 316 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 EMG1Q92979 244 aaKnown RBP13.76□□□□□ -0.21
CLN3-216ENST00000565316 EME1Q96AY2 570 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 MMP28Q9H239 520 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 TMEM133Q9H2Q1 129 aa13.76□□□□□ -0.21
CLN3-216ENST00000565316 IGHV2-26A0A0B4J1V2 119 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 IGKV1-9A0A0C4DH69 117 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 INMTO95050 263 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 JUNBP17275 347 aaPredicted RBP13.75□□□□□ -0.21
CLN3-216ENST00000565316 ERP29P30040 261 aaKnown RBP13.75□□□□□ -0.21
CLN3-216ENST00000565316 NPBWR2P48146 333 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 RBP2P50120 134 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 ATP1B3P54709 279 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 BLCAPP62952 87 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 ZNF85Q03923 595 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 BNIP1Q12981 228 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 UTS2BQ765I0 119 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 RDH10Q8IZV5 341 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 ZNF676Q8N7Q3 588 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 ADAT3Q96EY9 351 aaPredicted RBP13.75□□□□□ -0.21
CLN3-216ENST00000565316 CITED2Q99967 270 aaPredicted RBP13.75□□□□□ -0.21
CLN3-216ENST00000565316 RBFOX1Q9NWB1 397 aaKnown RBP13.75□□□□□ -0.21
CLN3-216ENST00000565316 HILPDAQ9Y5L2 63 aa13.75□□□□□ -0.21
CLN3-216ENST00000565316 F2RL2O00254 374 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 MGST3O14880 152 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 ENTPD6O75354 484 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 PRB2P02812 416 aaPredicted RBP13.74□□□□□ -0.21
CLN3-216ENST00000565316 FCGR1AP12314 374 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 BCL3P20749 454 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 GABRR1P24046 479 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 AZGP1P25311 298 aaKnown RBP13.74□□□□□ -0.21
CLN3-216ENST00000565316 OR3A1P47881 315 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 SPIN3Q5JUX0 258 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 FDX2Q6P4F2 183 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 ZBTB49Q6ZSB9 765 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 TPRX1Q8N7U7 411 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 OR4F17Q8NGA8 305 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 RFKQ969G6 155 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 OR4F4Q96R69 305 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 OCSTAMPQ9BR26 566 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 CLEC7AQ9BXN2 247 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 CHST6Q9GZX3 395 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 FAM53CQ9NYF3 392 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 GNG8Q9UK08 70 aa13.74□□□□□ -0.21
CLN3-216ENST00000565316 UBE2J1Q9Y385 318 aaPredicted RBP13.74□□□□□ -0.21
CLN3-216ENST00000565316 MMP23AO75900 390 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 ALDOBP05062 364 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 ISG15P05161 165 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 ATF1P18846 271 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 PRKACBP22694 351 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 DUSP1P28562 367 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 ATP6V1E1P36543 226 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 MTCP1P56278 107 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 P2RX3P56373 397 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 CDC42P60953 191 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 SLC34A1Q06495 639 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 TP53I3Q53FA7 332 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 OXLD1Q5BKU9 147 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 TMEM244Q5VVB8 128 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 FAM220AQ7Z4H9 259 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 OR4P4Q8NGL7 312 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 OR2G2Q8NGZ5 317 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 NDNFQ8TB73 568 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 R3HDM4Q96D70 268 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 MBOAT4Q96T53 435 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 HMG20AQ9NP66 347 aa13.73□□□□□ -0.21
CLN3-216ENST00000565316 J3QRE1 110 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 CYB5AP00167 134 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 HTR1DP28221 377 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 VDAC2P45880 294 aaPredicted RBP13.72□□□□□ -0.21
CLN3-216ENST00000565316 POU3F4P49335 361 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 CD83Q01151 205 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 PDZK1IP1Q13113 114 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 LHFPL2Q6ZUX7 228 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 KCTD20Q7Z5Y7 419 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 WFDC9Q8NEX5 89 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 TRUB1Q8WWH5 349 aaKnown RBP13.72□□□□□ -0.21
CLN3-216ENST00000565316 CORO2AQ92828 525 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 CENPNQ96H22 339 aaPredicted RBP13.72□□□□□ -0.21
CLN3-216ENST00000565316 OR5M11Q96RB7 305 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 OSBPL10Q9BXB5 764 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 RIBC2Q9H4K1 309 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 FRRS1LQ9P0K9 344 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 GLS2Q9UI32 602 aa13.72□□□□□ -0.21
CLN3-216ENST00000565316 OAZ3Q9UMX2 235 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms