RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 LGALS12Q96DT0 336 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 C4orf36Q96KX1 117 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 MBOAT4Q96T53 435 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 C9orf16Q9BUW7 83 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 RBFOX1Q9NWB1 397 aaKnown RBP18.23■□□□□ 0.51
CLN3-215ENST00000565236 GLS2Q9UI32 602 aa18.23■□□□□ 0.51
CLN3-215ENST00000565236 TRBV2A0A0J9YWF9 115 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 hADV38S2A0JD32 116 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 FAM90A8PA6NJQ4 464 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 IGHA1P01876 353 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 ARG1P05089 322 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 PRKACAP17612 351 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 KIR2DS4P43632 304 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 PDZK1IP1Q13113 114 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 GRK1Q15835 563 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 LHFPL3Q86UP9 236 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 ZNF676Q8N7Q3 588 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 PELI1Q96FA3 418 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 Q96MT0 163 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 ZNF714Q96N38 554 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 OPALINQ96PE5 141 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 IL36RNQ9UBH0 155 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 DSCAML1Q8TD84 2053 aa18.22■□□□□ 0.51
CLN3-215ENST00000565236 MPZL2O60487 215 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 IGHV1-8P0DP01 117 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 CALCBP10092 127 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 SNU13P55769 128 aaKnown RBP18.21■□□□□ 0.51
CLN3-215ENST00000565236 ZNF91Q05481 1191 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 ALKBH1Q13686 389 aaKnown RBP18.21■□□□□ 0.51
CLN3-215ENST00000565236 GALEQ14376 348 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 CRIP3Q6Q6R5 217 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 LIAT1Q6ZQX7 453 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 OR52N4Q8NGI2 321 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 OR10AC1Q8NH08 325 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 MALSU1Q96EH3 234 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 CHST6Q9GZX3 395 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 SIGLEC9Q9Y336 463 aa18.21■□□□□ 0.51
CLN3-215ENST00000565236 TBL2Q9Y4P3 447 aaKnown RBP18.21■□□□□ 0.51
CLN3-215ENST00000565236 OR4C45A6NMZ5 311 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 GABRB1P18505 474 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 DYNC1I2Q13409 638 aaKnown RBP18.2■□□□□ 0.5
CLN3-215ENST00000565236 ZNF146Q15072 292 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 PLA1AQ53H76 456 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 SPIN3Q5JUX0 258 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 TPRX1Q8N7U7 411 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 DTX3Q8N9I9 347 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 OR11H6Q8NGC7 330 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 OR51A4Q8NGJ6 313 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 OR13C9Q8NGT0 318 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 OR2T6Q8NHC8 308 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 RHOXF1Q8NHV9 184 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 PIFOQ8TCI5 191 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 RFT1Q96AA3 541 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 FOXRED1Q96CU9 486 aaPredicted RBP18.2■□□□□ 0.5
CLN3-215ENST00000565236 ALG8Q9BVK2 526 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 RANBP3Q9H6Z4 567 aaPredicted RBP18.2■□□□□ 0.5
CLN3-215ENST00000565236 NEK6Q9HC98 313 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 ABCB10Q9NRK6 738 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 LINC00312Q9Y6C7 94 aa18.2■□□□□ 0.5
CLN3-215ENST00000565236 NOTCH1P46531 2555 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 VGLL3A8MV65 326 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 ODF3BA8MYP8 253 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 SH2D1BO14796 132 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 MGST3O14880 152 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 PSPNO60542 156 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 FADS2O95864 444 aaKnown RBP18.19■□□□□ 0.5
CLN3-215ENST00000565236 DBTP11182 482 aaKnown RBP18.19■□□□□ 0.5
CLN3-215ENST00000565236 FAM189A2Q15884 450 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 SSX2Q16385 188 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 ZNF626Q68DY1 528 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 C11orf88Q6PI97 169 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 ZBTB49Q6ZSB9 765 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 Q6ZTK2 550 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 DYNAPQ8N1N2 210 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 SYS1Q8N2H4 156 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 OR4S1Q8NGB4 309 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 SLC29A1Q99808 456 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 NPFFR1Q9GZQ6 430 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 HMG20AQ9NP66 347 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 AMBNQ9NP70 447 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 MYRFQ9Y2G1 1151 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 GSTK1Q9Y2Q3 226 aa18.19■□□□□ 0.5
CLN3-215ENST00000565236 LOC100130705A0A1B0GUX0 176 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 MT-ND2P03891 347 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 RPSAP08865 295 aaKnown RBP18.18■□□□□ 0.5
CLN3-215ENST00000565236 RAB13P51153 203 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 EFNB2P52799 333 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 C2orf68Q2NKX9 166 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 TCF23Q7RTU1 214 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 SPACA5Q96QH8 159 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 NKX3-1Q99801 234 aaPredicted RBP18.18■□□□□ 0.5
CLN3-215ENST00000565236 ZCCHC4Q9H5U6 513 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 ISG20L2Q9H9L3 353 aaKnown RBP18.18■□□□□ 0.5
CLN3-215ENST00000565236 S100A14Q9HCY8 104 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 EXOSC4Q9NPD3 245 aaKnown RBP18.18■□□□□ 0.5
CLN3-215ENST00000565236 PCDHGB5Q9Y5G0 923 aa18.18■□□□□ 0.5
CLN3-215ENST00000565236 SIRPB1O00241 398 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 CHST1O43916 411 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 HERPUD1Q15011 391 aa18.17■□□□□ 0.5
CLN3-215ENST00000565236 TRAPPC6BQ86SZ2 158 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms