RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 CLEC2DQ9UHP7 191 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 ERGIC3Q9Y282 383 aa11.01□□□□□ -0.65
CLK3-216ENST00000564468 TMEM89A2RUT3 159 aa11□□□□□ -0.65
CLK3-216ENST00000564468 F8VVB4 439 aa11□□□□□ -0.65
CLK3-216ENST00000564468 F8VWA3 439 aa11□□□□□ -0.65
CLK3-216ENST00000564468 SH2D1BO14796 132 aa11□□□□□ -0.65
CLK3-216ENST00000564468 KDM4BO94953 1096 aa11□□□□□ -0.65
CLK3-216ENST00000564468 HAND1O96004 215 aa11□□□□□ -0.65
CLK3-216ENST00000564468 TMEM225BP0DP42 221 aa11□□□□□ -0.65
CLK3-216ENST00000564468 PRKACAP17612 351 aa11□□□□□ -0.65
CLK3-216ENST00000564468 BCL3P20749 454 aa11□□□□□ -0.65
CLK3-216ENST00000564468 NPBWR2P48146 333 aa11□□□□□ -0.65
CLK3-216ENST00000564468 SOX2P48431 317 aa11□□□□□ -0.65
CLK3-216ENST00000564468 HSPA13P48723 471 aa11□□□□□ -0.65
CLK3-216ENST00000564468 AQP4P55087 323 aa11□□□□□ -0.65
CLK3-216ENST00000564468 WNT4P56705 351 aa11□□□□□ -0.65
CLK3-216ENST00000564468 PPP3R1P63098 170 aa11□□□□□ -0.65
CLK3-216ENST00000564468 YIF1BQ5BJH7 314 aa11□□□□□ -0.65
CLK3-216ENST00000564468 RUSC1-AS1Q66K80 236 aa11□□□□□ -0.65
CLK3-216ENST00000564468 DMKNQ6E0U4 476 aaPredicted RBP11□□□□□ -0.65
CLK3-216ENST00000564468 XAF1Q6GPH4 301 aa11□□□□□ -0.65
CLK3-216ENST00000564468 OR8H2Q8N162 312 aa11□□□□□ -0.65
CLK3-216ENST00000564468 TMEM86BQ8N661 226 aa11□□□□□ -0.65
CLK3-216ENST00000564468 Q8N7P7 452 aa11□□□□□ -0.65
CLK3-216ENST00000564468 THRSPQ92748 146 aa11□□□□□ -0.65
CLK3-216ENST00000564468 MYDGFQ969H8 173 aa11□□□□□ -0.65
CLK3-216ENST00000564468 TMEM106AQ96A25 262 aa11□□□□□ -0.65
CLK3-216ENST00000564468 SPACA5Q96QH8 159 aa11□□□□□ -0.65
CLK3-216ENST00000564468 GPER1Q99527 375 aa11□□□□□ -0.65
CLK3-216ENST00000564468 HMG20AQ9NP66 347 aa11□□□□□ -0.65
CLK3-216ENST00000564468 RBFOX1Q9NWB1 397 aaKnown RBP11□□□□□ -0.65
CLK3-216ENST00000564468 FAM96BQ9Y3D0 163 aa11□□□□□ -0.65
CLK3-216ENST00000564468 ANGPTL7O43827 346 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 ZNF737O75373 536 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 ALDOBP05062 364 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 RNASE1P07998 156 aaKnown RBP10.99□□□□□ -0.65
CLK3-216ENST00000564468 UBE2E1P51965 193 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 MEF2CQ06413 473 aaPredicted RBP10.99□□□□□ -0.65
CLK3-216ENST00000564468 ACSM1Q08AH1 577 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 SLC9A3R2Q15599 337 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 C6orf141Q5SZD1 244 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 RNLSQ5VYX0 342 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 TMEM200BQ69YZ2 307 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 LAIR2Q6ISS4 152 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 ZNF529Q6P280 563 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 Q6YL49 198 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 ZNF485Q8NCK3 441 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 PXT1Q8NFP0 134 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 OR5D18Q8NGL1 313 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 NRG4Q8WWG1 115 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 GHSRQ92847 366 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 HEXA-AS1Q9H8Q6 139 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 EXOSC4Q9NPD3 245 aaKnown RBP10.99□□□□□ -0.65
CLK3-216ENST00000564468 TMEM138Q9NPI0 162 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 C19orf12Q9NSK7 152 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 FKBP14Q9NWM8 211 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 CKLFQ9UBR5 152 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 GSTK1Q9Y2Q3 226 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 SF3B6Q9Y3B4 125 aaKnown RBP10.99□□□□□ -0.65
CLK3-216ENST00000564468 TPRKBQ9Y3C4 175 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 POMT1Q9Y6A1 747 aa10.99□□□□□ -0.65
CLK3-216ENST00000564468 FUOMA2VDF0 154 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 PTGES3LE9PB15 166 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 RNASEK-C17orf49H0YIS7 233 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 LALBAP00709 142 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 CD1AP06126 327 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 CDK1P06493 297 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 FBP1P09467 338 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 GABRR1P24046 479 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 C21orf33P30042 268 aaPredicted RBP10.98□□□□□ -0.65
CLK3-216ENST00000564468 MTNR1BP49286 362 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 COMPP49747 757 aaPredicted RBP10.98□□□□□ -0.65
CLK3-216ENST00000564468 EDDM3BP56851 147 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 ERVFRD-1P60508 538 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 BDH1Q02338 343 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 FOXL1Q12952 345 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 Q499Y3 187 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 C16orf87Q6PH81 154 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 SATL1Q86VE3 508 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 PDZD9Q8IXQ8 264 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 NANOGP1Q8N7R0 232 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 CHST4Q8NCG5 386 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 OR4M1Q8NGD0 313 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 SSMEM1Q8WWF3 244 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 RGP1Q92546 391 aaPredicted RBP10.98□□□□□ -0.65
CLK3-216ENST00000564468 TNFRSF14Q92956 283 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 DUX5Q96PT3 197 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 S100A13Q99584 98 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 MND1Q9BWT6 205 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 TAS2R4Q9NYW5 299 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 SIRT4Q9Y6E7 314 aaPredicted RBP10.98□□□□□ -0.65
CLK3-216ENST00000564468 MGAM2Q2M2H8 2515 aa10.98□□□□□ -0.65
CLK3-216ENST00000564468 IGKV1-12A0A0C4DH73 117 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 TRBV5-5A0A0J9YX44 114 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 MDFIC2A0A1B0GVS7 189 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 hADV38S2A0JD32 116 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 MGST3O14880 152 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 NPFFO15130 113 aa10.97□□□□□ -0.65
CLK3-216ENST00000564468 HOXA3O43365 443 aaPredicted RBP10.97□□□□□ -0.65
CLK3-216ENST00000564468 PAHP00439 452 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms