RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 HFEQ30201 348 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 SKA3Q8IX90 412 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 OR2Y1Q8NGV0 311 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 LPAR3Q9UBY5 353 aa11.7□□□□□ -0.54
CLK3-215ENST00000564353 TRBV6-7A0A0A0MS04 114 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 NME2P1O60361 137 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 CBR3O75828 277 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 OR8U9P0C7N5 309 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 TGIF1Q15583 401 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 Q6ZPA2 131 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 OR52M1Q8NGK5 317 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 OR8U1Q8NH10 309 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 NUDT16L1Q9BRJ7 211 aaKnown RBP11.69□□□□□ -0.54
CLK3-215ENST00000564353 C20orf24Q9BUV8 137 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 ZNF700Q9H0M5 742 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 ZNF442Q9H7R0 627 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 UQCC1Q9NVA1 299 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 LOC102723996A0A087X1L8 192 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 EIF3GO75821 320 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLK3-215ENST00000564353 ACAA1P09110 424 aaPredicted RBP11.69□□□□□ -0.54
CLK3-215ENST00000564353 CD79AP11912 226 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 RBP2P50120 134 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 MLF1P58340 268 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 C3AR1Q16581 482 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 FAM27BQ5VT28 67 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 SVBPQ8N300 66 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 STOML3Q8TAV4 291 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 RTN4IP1Q8WWV3 396 aaPredicted RBP11.69□□□□□ -0.54
CLK3-215ENST00000564353 TMEM68Q96MH6 324 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 SCGB3A2Q96PL1 93 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 C1orf123Q9NWV4 160 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 MIOXQ9UGB7 285 aa11.69□□□□□ -0.54
CLK3-215ENST00000564353 RCL1Q9Y2P8 373 aaKnown RBP11.69□□□□□ -0.54
CLK3-215ENST00000564353 LY86O95711 162 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 FCGR3AP08637 254 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 OTX1P32242 354 aaPredicted RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 ZNF616Q08AN1 781 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 IL11RAQ14626 422 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 EXT1Q16394 746 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 Q6ZRG5 221 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 SLC25A26Q70HW3 274 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 GGNQ86UU5 652 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 EDARADDQ8WWZ3 215 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 FOXB1Q99853 325 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 CNTNAP3Q9BZ76 1288 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 WDR54Q9H977 334 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 TMEM38BQ9NVV0 291 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 PARPBPQ9NWS1 579 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 ZNF728P0DKX0 622 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 PVALBP20472 110 aaPredicted RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 CRYGSP22914 178 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 OMGP23515 440 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 CTSSP25774 331 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 B3GALT5-AS1P59052 145 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 HSD17B11Q8NBQ5 300 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 CPEB3Q8NE35 698 aaKnown RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 SH3BGRL3Q9H299 93 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 ZNF407Q9C0G0 2248 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 NCKAP5O14513 1909 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 LOC102725191A0A1B0GVB3 256 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 PHF1O43189 567 aaPredicted RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 HLA-HP01893 362 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 MBPP02686 304 aaPredicted RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 PPT1P50897 306 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 MRPS34P82930 218 aaKnown RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 NSUN5P2Q63ZY6 315 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 AKR1E2Q96JD6 320 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 AQP10Q96PS8 301 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 TM2D1Q9BX74 207 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 WNT5BQ9H1J7 359 aa11.68□□□□□ -0.54
CLK3-215ENST00000564353 PURGQ9UJV8 347 aaKnown RBP11.68□□□□□ -0.54
CLK3-215ENST00000564353 A0A087WZY1 265 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 FAM166BA8MTA8 275 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 CEACAM18A8MTB9 384 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 VAMP5O95183 116 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 SFTA3P0C7M3 94 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 DAOP14920 347 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 RAC3P60763 192 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 NHLH2Q02577 135 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 PABPC1L2AQ5JQF8 200 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 C9orf152Q5JTZ5 239 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 RBMS3Q6XE24 437 aaKnown RBP11.67□□□□□ -0.54
CLK3-215ENST00000564353 TIPARPQ7Z3E1 657 aaKnown RBP11.67□□□□□ -0.54
CLK3-215ENST00000564353 CALHM2Q9HA72 323 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 TMEM100Q9NV29 134 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 AMDHD2Q9Y303 409 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 DNAJC13O75165 2243 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 ZNF716A6NP11 495 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 IFNA21P01568 189 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 EDN3P14138 238 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 FAM3AP98173 230 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 PJVKQ0ZLH3 352 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 RAB35Q15286 201 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 SPIN3Q5JUX0 258 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 MYPOPQ86VE0 399 aaPredicted RBP11.67□□□□□ -0.54
CLK3-215ENST00000564353 DEFB123Q8N688 67 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 ADAMTS17Q8TE56 1095 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 SECTM1Q8WVN6 248 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 SLAMF9Q96A28 289 aa11.67□□□□□ -0.54
CLK3-215ENST00000564353 PRRX2Q99811 253 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms