RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 BEST4Q8NFU0 473 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 VN1R2Q8NFZ6 395 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OR7A2PQ8NGA2 310 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OR10AD1Q8NGE0 317 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OR1N2Q8NGR9 330 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 OR13J1Q8NGT2 312 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 LRRC15Q8TF66 581 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 PTX4Q96A99 478 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 GPR146Q96CH1 333 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 C1QTNF5Q9BXJ0 243 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 LPAR5Q9H1C0 372 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 RNF167Q9H6Y7 350 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 RNF121Q9H920 327 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 TBC1D17Q9HA65 648 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 NMRAL1Q9HBL8 299 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 DCAF13Q9NV06 445 aaKnown RBP4.33□□□□□ -1.72
VPS35-205ENST00000563984 PRODH2Q9UF12 536 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 NAT8BQ9UHF3 227 aa4.33□□□□□ -1.72
VPS35-205ENST00000563984 CACNA1SQ13698 1873 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 TRPM3Q9HCF6 1732 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 CLTCL1P53675 1640 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 EFCAB5A4FU69 1503 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ARHGEF12Q9NZN5 1544 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ERVK-7P63135 1459 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 RGS12O14924 1447 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 A0A0U1RQF3 1178 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ANKRD20A5PA0PJZ0 165 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 C1orf226A1L170 272 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 LRRC30A6NM36 301 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNF705EA8MWA4 302 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 NPIPB11E5RHQ5 1161 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 TNFRSF11BO00300 401 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 CD160O95971 181 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 NRASP01111 189 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SERPINE1P05121 402 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 CSN3P07498 182 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 NMBP08949 121 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 HIST1H2AGP0C0S8 130 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 SP9P0CG40 484 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 PLA2G2AP14555 144 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 TCN2P20062 427 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 GNLYP22749 145 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 FCARP24071 287 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 NPY1RP25929 384 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 CHATP28329 748 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 AGTR1P30556 359 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SOX3P41225 446 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 NBL1P41271 181 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 AKR1C2P52895 323 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 PDX1P52945 283 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 CTBP2P56545 445 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 CDK3Q00526 305 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 PSG4Q00888 419 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SMAGPQ0VAQ4 97 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 GINS1Q14691 196 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR8B8Q15620 311 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SSX1Q16384 188 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZSWIM7Q19AV6 140 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 NXNL2Q5VZ03 156 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNF324BQ6AW86 544 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 DUX4L9Q6RFH8 374 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 ARL9Q6T311 187 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 DHRS11Q6UWP2 260 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNF705AQ6ZN79 300 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 Q6ZT83 130 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 C18orf65Q6ZTR6 163 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 FAM19A5Q7Z5A7 132 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 C5orf24Q7Z6I8 188 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SLC35E3Q7Z769 313 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 IFNEQ86WN2 208 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNF567Q8N184 647 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 UMODL1-AS1Q8N2C9 162 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SPEM1Q8N4L4 309 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SPICQ8N5J4 248 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNF614Q8N883 585 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR4F6Q8NGB9 312 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR4X1Q8NH49 305 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR5W2Q8NH69 310 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 ZNRF2Q8NHG8 242 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 RNF138Q8WVD3 245 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 DYRK2Q92630 601 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 HIST1H2ACQ93077 130 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 TEX37Q96LM6 180 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 RDH12Q96NR8 316 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 DEFB118Q96PH6 123 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SIGLEC12Q96PQ1 595 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 DDOQ99489 341 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 MGLLQ99685 303 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 MIEN1Q9BRT3 115 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 FAIM2Q9BWQ8 316 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR8D2Q9GZM6 311 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 OR51I1Q9H343 314 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 POLD4Q9HCU8 107 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 EXOSC4Q9NPD3 245 aaKnown RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 B3GAT2Q9NPZ5 323 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 HINT3Q9NQE9 182 aaKnown RBP4.32□□□□□ -1.72
VPS35-205ENST00000563984 CISHQ9NSE2 258 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 SLC25A37Q9NYZ2 338 aa4.32□□□□□ -1.72
VPS35-205ENST00000563984 IL36RNQ9UBH0 155 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms