RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 ERVPABLB-1P60509 514 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OSTNP61366 133 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SNRPFP62306 86 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 HIST1H3AP68431 136 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 BTN3A2P78410 334 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 HOXC5Q00444 222 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FABP5Q01469 135 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 AESQ08117 197 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SKP2Q13309 424 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FZD2Q14332 565 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SLC22A6Q4U2R8 563 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 PHLDA2Q53GA4 152 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 C6orf226Q5I0X4 101 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GCSAMLQ5JQS6 135 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 LIPKQ5VXJ0 399 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 LYSMD4Q5XG99 296 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TMEM42Q69YG0 159 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 NIPAL3Q6P499 406 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SLC25A47Q6Q0C1 308 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 UNQ9370/PRO34162Q6UXP9 181 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF730Q6ZMV8 503 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF620Q6ZNG0 422 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 AHSA2Q719I0 299 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 C5orf24Q7Z6I8 188 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ACOT1Q86TX2 421 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF546Q86UE3 836 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TMEM183AQ8IXX5 376 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 MMD2Q8IY49 270 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 BMPERQ8N8U9 685 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 INO80EQ8NBZ0 244 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 CHST4Q8NCG5 386 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF485Q8NCK3 441 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR5AU1Q8NGC0 362 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR4P4Q8NGL7 312 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR6N2Q8NGY6 317 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR1L3Q8NH93 324 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 NEIL3Q8TAT5 605 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF675Q8TD23 568 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 DOK4Q8TEW6 326 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GATAD1Q8WUU5 269 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 EEF1AKMT1Q8WVE0 214 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 SPRYD4Q8WW59 207 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 CACNG8Q8WXS5 425 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR8D1Q8WZ84 308 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 GLYATL1Q969I3 302 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 MCHR2Q969V1 340 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 UPRTQ96BW1 309 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF707Q96C28 371 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 ZNF689Q96CS4 500 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 MRAP2Q96G30 205 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 CXorf58Q96LI9 332 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 KCTD7Q96MP8 289 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR4K3Q96R72 315 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FEVQ99581 238 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 MGLLQ99685 303 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ATG101Q9BSB4 218 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 PSMG3Q9BT73 122 aaPredicted RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 TAPBPLQ9BX59 468 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ULBP2Q9BZM5 246 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 OR2J1Q9GZK6 312 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 ARL6Q9H0F7 186 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TLNRD1Q9H1K6 362 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FZD8Q9H461 694 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 RBKSQ9H477 322 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 RAB9BQ9NP90 201 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 YAE1D1Q9NRH1 226 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TMEM38BQ9NVV0 291 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 BET1LQ9NYM9 111 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TAS2R8Q9NYW2 309 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 TAS2R5Q9NYW4 299 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 PRODH2Q9UF12 536 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 MRM2Q9UI43 246 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 HHLA2Q9UM44 414 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 FARSAQ9Y285 508 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 MRPS16Q9Y3D3 137 aaKnown RBP2.86□□□□□ -1.95
VPS35-203ENST00000562420 COL1A2P08123 1366 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 NHSL1Q5SYE7 1610 aa2.86□□□□□ -1.95
VPS35-203ENST00000562420 LMO7Q8WWI1 1683 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 LTN1O94822 1766 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 STRCQ7RTU9 1775 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 KIF13BQ9NQT8 1826 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 A0A0J9YWU9 116 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 A0A1W2PR80 420 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TCRBV9S1A1TA0A576 114 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 IGSF23A1L1A6 192 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TMEM189A5PLL7 270 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR6C6A6NF89 314 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 FAM159BA6NKW6 160 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ZNF726A6NNF4 738 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 C15orf61A6NNL5 157 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 KRTAP16-1A8MUX0 517 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ZNF705EA8MWA4 302 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 F5H5T6 163 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 APOC4-APOC2K7ER74 178 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 EPHB6O15197 1021 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CCL25O15444 150 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 RBFOX2O43251 390 aaKnown RBP eCLIP2.85□□□□□ -1.95
VPS35-203ENST00000562420 B4GALT5O43286 388 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ZNF749O43361 778 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR7C2O60412 319 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms