RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 SCGB1D1O95968 90 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 PNPP00491 289 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 IGKV3-11P04433 115 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 HNF1AP20823 631 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 GLRA1P23415 457 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 KCNMB1Q16558 191 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 FNDC7Q5VTL7 733 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 PLXDC2Q6UX71 529 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 MRPL41Q8IXM3 137 aaKnown RBP11.65□□□□□ -0.54
CLK3-206ENST00000562078 ZNF721Q8TF20 911 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 HIST1H2AAQ96QV6 131 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 ADOQ96SZ5 270 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 FGF21Q9NSA1 209 aa11.65□□□□□ -0.54
CLK3-206ENST00000562078 CHTOPQ9Y3Y2 248 aaKnown RBP11.65□□□□□ -0.54
CLK3-206ENST00000562078 CPAMD8Q8IZJ3 1885 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 A0A0A6YYH2 397 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 A6NJ64 397 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 ITGB1BP1O14713 200 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 IL6RP08887 468 aaPredicted RBP11.64□□□□□ -0.55
CLK3-206ENST00000562078 CEACAM8P31997 349 aaPredicted RBP11.64□□□□□ -0.55
CLK3-206ENST00000562078 SUCLG1P53597 346 aaKnown RBP11.64□□□□□ -0.55
CLK3-206ENST00000562078 FOXL2P58012 376 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 NSDHLQ15738 373 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 ZNF440Q8IYI8 595 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 KLHDC3Q9BQ90 382 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 MRPL22Q9NWU5 206 aaKnown RBP11.64□□□□□ -0.55
CLK3-206ENST00000562078 CKLFQ9UBR5 152 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 DKKL1Q9UK85 242 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 IGKV1D-42A0A075B6H8 117 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 BORCS7-ASMTA0A0B4J1R7 106 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 A0A1B0GX78 115 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 FRG2CA6NGY1 282 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 A6NIZ1 184 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 B4E171 279 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 K7N7A8 449 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 ALOX5APP20292 161 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 P2RY1P47900 373 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 RAP1BP61224 184 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 SHISA6Q6ZSJ9 500 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 ASB5Q8WWX0 329 aa11.64□□□□□ -0.55
CLK3-206ENST00000562078 ARPC3O15145 178 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 RRP8O43159 456 aaKnown RBP11.63□□□□□ -0.55
CLK3-206ENST00000562078 ASCL1P50553 236 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 MMP16P51512 607 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 HSF1Q00613 529 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 WBP2NLQ6ICG8 309 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 WDR74Q6RFH5 385 aaPredicted RBP11.63□□□□□ -0.55
CLK3-206ENST00000562078 C9orf40Q8IXQ3 194 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 C11orf42Q8N5U0 333 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 ADIPOR1Q96A54 375 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 ZNF501Q96CX3 271 aaPredicted RBP11.63□□□□□ -0.55
CLK3-206ENST00000562078 SLC25A44Q96H78 314 aaPredicted RBP11.63□□□□□ -0.55
CLK3-206ENST00000562078 FOXN4Q96NZ1 517 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 VN1R1Q9GZP7 353 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 SMDT1Q9H4I9 107 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 ELOVL3Q9HB03 270 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 WSB1Q9Y6I7 421 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 CFAP54Q96N23 3096 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 LY6G6EA0A0G2JKS1 128 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 C17orf51A8MQB3 221 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 CHRM2P08172 466 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 TNFSF10P50591 281 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 FOXF1Q12946 379 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 UNC119Q13432 240 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 ICAM4Q14773 271 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 TMEM176BQ3YBM2 270 aaPredicted RBP11.63□□□□□ -0.55
CLK3-206ENST00000562078 SPSB3Q6PJ21 355 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 EXTL1Q92935 676 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 NAT6Q93015 286 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 ZNF524Q96C55 264 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 RTN4RQ9BZR6 473 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 SERINC1Q9NRX5 453 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 VAX2Q9UIW0 290 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 U3KQA8 63 aa11.63□□□□□ -0.55
CLK3-206ENST00000562078 AHSA1O95433 338 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 HPRT1P00492 218 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 KNG1P01042 644 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 IL12BP29460 328 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 WNT5AP41221 380 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 CDKN1BP46527 198 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 RND2P52198 227 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 HLA-DRB3P79483 266 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 MFGE8Q08431 387 aaPredicted RBP11.62□□□□□ -0.55
CLK3-206ENST00000562078 C10orf53Q8N6V4 93 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 ZFP62Q8NB50 900 aaPredicted RBP11.62□□□□□ -0.55
CLK3-206ENST00000562078 NOXO1Q8NFA2 376 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 CABLES2Q9BTV7 478 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 FOXJ2Q9P0K8 574 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 A0A1W2PPQ1 181 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 CLDN34H7C241 214 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 XRCC2O43543 280 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 LMX1BO60663 402 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 NXPH2O95156 264 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 LCATP04180 440 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 IGFBP3P17936 291 aaPredicted RBP11.62□□□□□ -0.55
CLK3-206ENST00000562078 CCL7P80098 99 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 MEP1BQ16820 701 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 HLA-DQA1Q5Y7H0 255 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 SLC25A26Q70HW3 274 aa11.62□□□□□ -0.55
CLK3-206ENST00000562078 SLC16A14Q7RTX9 510 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms