RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	OR13C3	Q8NGS6	347 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	TAF15	Q92804	592 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MBOAT4	Q96T53	435 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	COMMD4	Q9H0A8	199 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	GAL3ST2	Q9H3Q3	398 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MTCH1	Q9NZJ7	389 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MINOS1-NBL1	R4GNA1	71 aa		11.46	□□□□□ -0.57
TPM1-223	ENST00000560445	MEGF8	Q7Z7M0	2845 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	TRGV10	A0A0A0MS01	117 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	TMEM212	A6NML5	194 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	SH2D1B	O14796	132 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF737	O75373	536 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	ARG1	P05089	322 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	CCL3L1	P16619	93 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	ERP29	P30040	261 aa	Known RBP	11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	PRB3	Q04118	309 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	RAB40B	Q12829	278 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF273	Q14593	569 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	HERPUD1	Q15011	391 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	TRAPPC6B	Q86SZ2	158 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	OR11H6	Q8NGC7	330 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	OR5D14	Q8NGL3	314 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	STMN2	Q93045	179 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	CREB3L1	Q96BA8	519 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	FGGY	Q96C11	551 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	S100A14	Q9HCY8	104 aa		11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	EXOSC4	Q9NPD3	245 aa	Known RBP	11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	UBE2J1	Q9Y385	318 aa	Predicted RBP	11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	RPL36	Q9Y3U8	105 aa	Known RBP	11.45	□□□□□ -0.58
TPM1-223	ENST00000560445	IRGM	A1A4Y4	181 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	MAGEB3	O15480	346 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	CSF1	P09603	554 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	IGHV1-8	P0DP01	117 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	DBT	P11182	482 aa	Known RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	PRKACA	P17612	351 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	KIR3DL2	P43630	455 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	DYNLT3	P51808	116 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	GBX2	P52951	348 aa	Predicted RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	DLX1	P56177	255 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF91	Q05481	1191 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	PDZK1IP1	Q13113	114 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	DYNC1I2	Q13409	638 aa	Known RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	GALE	Q14376	348 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	EDDM3A	Q14507	147 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	KLHL22	Q53GT1	634 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF626	Q68DY1	528 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	SLC35E4	Q6ICL7	350 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF782	Q6ZMW2	699 aa	Predicted RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	CAPSL	Q8WWF8	208 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	AKR1E2	Q96JD6	320 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	C4orf36	Q96KX1	117 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	RDH12	Q96NR8	316 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	ALG8	Q9BVK2	526 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	FRRS1L	Q9P0K9	344 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	EXOG	Q9Y2C4	368 aa	Known RBP	11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	SESN1	Q9Y6P5	492 aa		11.44	□□□□□ -0.58
TPM1-223	ENST00000560445	IGKV1-27	A0A075B6S5	117 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	FAM90A8P	A6NJQ4	464 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445		H3BSH0	61 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445		J3QLW9	94 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445		J3QRE1	110 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	F2RL2	O00254	374 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	PEX14	O75381	377 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ALX3	O95076	343 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	BAG2	O95816	211 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF19	P17023	458 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	DLX6	P56179	175 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	P2RX3	P56373	397 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	MED21	Q13503	144 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ALKBH1	Q13686	389 aa	Known RBP	11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	LY6E	Q16553	131 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ASPHD2	Q6ICH7	369 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	RTN4RL2	Q86UN3	420 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	SERPINA12	Q8IW75	414 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	BATF2	Q8N1L9	274 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	PQLC1	Q8N2U9	271 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	C11orf42	Q8N5U0	333 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF555	Q8NEP9	628 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ZNF596	Q8TC21	504 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ADAT3	Q96EY9	351 aa	Predicted RBP	11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	PELI1	Q96FA3	418 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	AJUBA	Q96IF1	538 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	CLEC7A	Q9BXN2	247 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	ZCCHC4	Q9H5U6	513 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	HMG20A	Q9NP66	347 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	RBFOX1	Q9NWB1	397 aa	Known RBP	11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	TCF19	Q9Y242	345 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	WNK1	Q9H4A3	2382 aa		11.43	□□□□□ -0.58
TPM1-223	ENST00000560445	TET2	Q6N021	2002 aa	Predicted RBP	11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	LOC100130705	A0A1B0GUX0	176 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	ODF3B	A8MYP8	253 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	WIPF1	O43516	503 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	CSN2	P05814	226 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	CD2	P06729	351 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	HCK	P08631	526 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	CEACAM3	P40198	252 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	EFNB2	P52799	333 aa		11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	SRSF4	Q08170	494 aa	Known RBP	11.42	□□□□□ -0.58
TPM1-223	ENST00000560445	FAM189A2	Q15884	450 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms