RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 NPBWR2P48146 333 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 ZNF81P51508 661 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 RAB14P61106 215 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 OSR2Q8N2R0 312 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 FAM89BQ8N5H3 189 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 Q8NFD4 153 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 OR56B1Q8NGI3 324 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 OR10R2Q8NGX6 335 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 OR10Z1Q8NGY1 313 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 LILRB1Q8NHL6 650 aaPredicted RBP9.52□□□□□ -0.89
USP3-218ENST00000560202 FAM222BQ8WU58 562 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 C15orf40Q8WUR7 153 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 MRPS24Q96EL2 167 aaKnown RBP9.52□□□□□ -0.89
USP3-218ENST00000560202 ELMOD3Q96FG2 381 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 HEATR1Q9H583 2144 aaKnown RBP9.52□□□□□ -0.89
USP3-218ENST00000560202 ZC4H2Q9NQZ6 224 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 MED9Q9NWA0 146 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 CISD1Q9NZ45 108 aaKnown RBP9.52□□□□□ -0.89
USP3-218ENST00000560202 RALYQ9UKM9 306 aaKnown RBP9.52□□□□□ -0.89
USP3-218ENST00000560202 CADP27708 2225 aa9.52□□□□□ -0.89
USP3-218ENST00000560202 CDIPTO14735 213 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 RHBDL1O75783 438 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 RNF224P0DH78 156 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 CPT2P23786 658 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 CD200P41217 278 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ZNF672Q499Z4 452 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 PRAMEF6Q5VXH4 476 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ELP2Q6IA86 826 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 FBXL14Q8N1E6 418 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 BATF2Q8N1L9 274 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 CHST4Q8NCG5 386 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ZNF680Q8NEM1 530 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 Q96M66 194 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 NUDT16L1Q9BRJ7 211 aaKnown RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 TLNRD1Q9H1K6 362 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 CLEC4MQ9H2X3 399 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 ZDHHC8Q9ULC8 765 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 POLDIP2Q9Y2S7 368 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 HCFC1P51610 2035 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 F8VVB4 439 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 F8VWA3 439 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 SOCS1O15524 211 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 GSTZ1O43708 216 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 PTBP3O95758 552 aaKnown RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 DHFRP00374 187 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 IGHV1-46P01743 117 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 PTHLHP12272 177 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 INPP1P49441 399 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 TMEM50BP56557 158 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 FGF12P61328 243 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 MRPS10P82664 201 aaKnown RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 DGCR2P98153 550 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 MPPED2Q15777 294 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 C11orf53Q8IXP5 236 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ZNF431Q8TF32 576 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 GCDHQ92947 438 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 MEGF10Q96KG7 1140 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ZNF488Q96MN9 340 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 OR2V2Q96R30 315 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 THAP7Q9BT49 309 aaPredicted RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 AUNIPQ9H7T9 357 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ZMAT3Q9HA38 289 aaKnown RBP9.51□□□□□ -0.89
USP3-218ENST00000560202 UBQLN2Q9UHD9 624 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 SLC23A1Q9UHI7 598 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 KIF25Q9UIL4 384 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 ST3GAL6Q9Y274 331 aa9.51□□□□□ -0.89
USP3-218ENST00000560202 A6NLC8 198 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 FOXI3A8MTJ6 420 aaPredicted RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 B9A039 149 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 INMT-MINDY4F8WBC2 141 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 GABARAPH6UMI1 98 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 I3L521 148 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 M0R233 179 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 AKR7A2O43488 359 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 NDUFA2O43678 99 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 ACAA1P09110 424 aaPredicted RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 PGA5P0DJD9 388 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 RRASP10301 218 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 ANXA3P12429 323 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 GABRR1P24046 479 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 BLVRBP30043 206 aaPredicted RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 SRP9P49458 86 aaKnown RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 RAG2P55895 527 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 RBM11P57052 281 aaKnown RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 EFNB3Q15768 340 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 TAF9Q16594 264 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 MST1LQ2TV78 715 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 PIGYQ3MUY2 71 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 ZNF260Q3ZCT1 412 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 CDNFQ49AH0 187 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 RNASE12Q5GAN4 147 aaKnown RBP9.5□□□□□ -0.89
USP3-218ENST00000560202 CD276Q5ZPR3 534 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 ZNF826PQ6ZT77 177 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 SMIM4Q8WVI0 70 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 RAB3CQ96E17 227 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 DIRC2Q96SL1 478 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 RHOFQ9HBH0 211 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 UFSP2Q9NUQ7 469 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 MCUBQ9NWR8 336 aa9.5□□□□□ -0.89
USP3-218ENST00000560202 COPZ2Q9P299 210 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms