RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TEX37Q96LM6 180 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MS4A4EQ96PG1 132 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TEAD3Q99594 435 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TSNAXQ99598 290 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ARHGDIGQ99819 225 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 OMDQ99983 421 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SNRNP25Q9BV90 132 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 C1QTNF6Q9BXI9 259 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 TOLLIPQ9H0E2 274 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ABCG5Q9H222 651 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 METTL17Q9H7H0 456 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 REEP1Q9H902 201 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PLEKHA1Q9HB21 404 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CTPS2Q9NRF8 586 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 SMCO4Q9NRQ5 59 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 CISHQ9NSE2 258 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 NUDT15Q9NV35 164 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 NLE1Q9NVX2 485 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RBM22Q9NW64 420 aaKnown RBP eCLIP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MS4A12Q9NXJ0 267 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 PDP1Q9P0J1 537 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 WRAP73Q9P2S5 460 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 UXTQ9UBK9 157 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF629Q9UEG4 869 aaPredicted RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 FZR1Q9UM11 496 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 UBQLN1Q9UMX0 589 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 RPL36Q9Y3U8 105 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MTCH2Q9Y6C9 303 aa2.15□□□□□ -2.07
VPS13C-208ENST00000559119 MYH9P35579 1960 aaKnown RBP2.15□□□□□ -2.07
VPS13C-208ENST00000559119 ARFGEF1Q9Y6D6 1849 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 NAV1Q8NEY1 1877 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 RGPD3A6NKT7 1758 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 RGPD4Q7Z3J3 1758 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM72A0PK05 275 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM89A2RUT3 159 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 RNF222A6NCQ9 220 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 BTBD17A6NE02 478 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TSTD3H0UI37 97 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 RPL36A-HNRNPH2H7BZ11 118 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GPR31O00270 319 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF593O00488 134 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 B4GALT5O43286 388 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 MBTPS2O43462 519 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SSNA1O43805 119 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GGCTO75223 188 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR2F2O95006 317 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 F10P00742 488 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 IFNA17P01571 189 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HLA-DPB1P04440 258 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ALDOBP05062 364 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PCCBP05166 539 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SERPIND1P05546 499 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ASGR1P07306 291 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SLC35G4P0C7Q5 338 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 LINC00032P0C843 101 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR8G3PP0DMU2 310 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 C1GALT1C1LP0DN25 315 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CLUP10909 449 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PRPS2P11908 318 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SLC25A4P12235 298 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF14P17017 642 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 DPP4P27487 766 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 AGTR1P30556 359 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 KDELR2P33947 212 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CDKN2CP42773 168 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 VSX2P58304 361 aaPredicted RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 MTPNP58546 118 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 AP3S2P59780 193 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CRADDP78560 199 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 BDH1Q02338 343 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TNFRSF9Q07011 255 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 OR2F1Q13607 317 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HTR4Q13639 388 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 DDX39BQ13838 428 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF345Q14585 488 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ARHGAP19Q14CB8 494 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 IRF4Q15306 451 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 HMGN3Q15651 99 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 EXOC3L2Q2M3D2 409 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 DEFB115Q30KQ5 88 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF699Q32M78 642 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CHRFAM7AQ494W8 412 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 IDNKQ5T6J7 187 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 C12orf73Q69YU5 71 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PTRHD1Q6GMV3 140 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 APOBEC3HQ6NTF7 200 aaKnown RBP2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CES3Q6UWW8 571 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ALKAL2Q6UX46 152 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 LRRN1Q6UXK5 716 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 SPNS3Q6ZMD2 512 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TMEM91Q6ZNR0 172 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 PID1Q7Z2X4 250 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 FAM220AQ7Z4H9 259 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 UNC93AQ86WB7 457 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 CBLN2Q8IUK8 224 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 GID4Q8IVV7 300 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 ZNF695Q8IW36 515 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 MSRB3Q8IXL7 192 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 TOMM5Q8N4H5 51 aa2.14□□□□□ -2.07
VPS13C-208ENST00000559119 KCNRGQ8N5I3 272 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms