RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C17orf78Q8N4C9 275 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 ZNF561Q8N587 486 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 ZSCAN4Q8NAM6 433 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 DMRTA2Q96SC8 542 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 REPIN1Q9BWE0 567 aaKnown RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 OBP2BQ9NPH6 170 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 GPR173Q9NS66 373 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 MRPL15Q9P015 296 aaKnown RBP10.94□□□□□ -0.66
SHMT2-229ENST00000557348 KLK13Q9UKR3 277 aa10.94□□□□□ -0.66
SHMT2-229ENST00000557348 LOC100509620A0A075B734 347 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 MED19A0JLT2 244 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 FIGNL2A6NMB9 653 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 CST4P01036 141 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 IL2RAP01589 272 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 PTHLHP12272 177 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 EDN3P14138 238 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 TUBG1P23258 451 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 ANOS1P23352 680 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 BLOC1S1P78537 153 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 PJVKQ0ZLH3 352 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 FOXC1Q12948 553 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 RNASE10Q5GAN6 216 aaKnown RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 PLXDC2Q6UX71 529 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 ASCL4Q6XD76 172 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 TRAPPC6BQ86SZ2 158 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 OR51T1Q8NGJ9 327 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 SPACA5Q96QH8 159 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 VRK1Q99986 396 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 ZNF471Q9BX82 626 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 TUBG2Q9NRH3 451 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 METTL1Q9UBP6 276 aaKnown RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 NOP16Q9Y3C1 178 aaKnown RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 CNOT1A5YKK6 2376 aaKnown RBP10.93□□□□□ -0.66
SHMT2-229ENST00000557348 SPTBN2O15020 2390 aa10.93□□□□□ -0.66
SHMT2-229ENST00000557348 A0A0B4J2A0 478 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TEX13DA0A0J9YY54 714 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MBD3L4A6NDZ8 208 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MBD3L3A6NE82 208 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MBD3L5A6NJ08 208 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 C1orf196B1AJZ1 125 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 CD3DP04234 171 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 FABP1P07148 127 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TMEM225BP0DP42 221 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 COX5AP20674 150 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 CD34P28906 385 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 LUMP51884 338 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TAS2R31P59538 309 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 GUCA2AQ02747 115 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 RSU1Q15404 277 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MOGAT2Q3SYC2 334 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PLCXD3Q63HM9 321 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 FJX1Q86VR8 437 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 SAXO1Q8IYX7 474 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 COMMD1Q8N668 190 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MBD3L2Q8NHZ7 208 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 NPRL2Q8WTW4 380 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 NKX3-1Q99801 234 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 GAL3ST1Q99999 423 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 SELENOIQ9C0D9 397 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 SEBOXQ9HB31 216 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 DKK4Q9UBT3 224 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 SHPKQ9UHJ6 478 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 OR2AT4A6NND4 320 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TAAR5O14804 337 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 CCNOP22674 350 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PTAFRP25105 342 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 CD81P60033 236 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 P2RY6Q15077 328 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PEA15Q15121 130 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 DNLZQ5SXM8 178 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 DCAF12L2Q5VW00 463 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 FAM180AQ6UWF9 173 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 BAP18Q8IXM2 172 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 C1orf174Q8IYL3 243 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TMEM104Q8NE00 496 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 OR51S1Q8NGJ8 323 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 OR52B4Q8NGK2 314 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MITD1Q8WV92 249 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PIK3IP1Q96FE7 263 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 HIST1H2AAQ96QV6 131 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 TAAR6Q96RI8 345 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PHB2Q99623 299 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 NMES1Q9C002 83 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 ELL3Q9HB65 397 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-229ENST00000557348 PLSCR4Q9NRQ2 329 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 ANAPC10Q9UM13 185 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 EDARQ9UNE0 448 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 MSRB2Q9Y3D2 182 aa10.92□□□□□ -0.66
SHMT2-229ENST00000557348 C5orf52A6NGY3 159 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 F5H0A9 414 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-229ENST00000557348 MFNGO00587 321 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 RRP8O43159 456 aaKnown RBP10.91□□□□□ -0.66
SHMT2-229ENST00000557348 SERPINA2P20848 420 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 UCNP55089 124 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 FOXG1P55316 489 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-229ENST00000557348 PDZK1IP1Q13113 114 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 HIKESHIQ53FT3 197 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 LYG2Q86SG7 212 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 MDP1Q86V88 176 aa10.91□□□□□ -0.66
SHMT2-229ENST00000557348 SLC25A42Q86VD7 318 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms