RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PSMB2P49721 201 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 PPP1CAP62136 330 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 RAB31Q13636 194 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 CEACAM21Q3KPI0 293 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 LINC00303Q3SY05 128 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 YIF1BQ5BJH7 314 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 IDNKQ5T6J7 187 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 MRPL52Q86TS9 123 aaKnown RBP2.16□□□□□ -2.06
SCFD1-221ENST00000556534 KRTAP13-1Q8IUC0 172 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 CYP4Z2PQ8N1L4 340 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SPANXA2-OT1Q8N9U9 137 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 ST20-AS1Q8NBB2 130 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 OR4K17Q8NGC6 315 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 OR9A2Q8NGT5 310 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 RNASEH2CQ8TDP1 164 aaKnown RBP2.16□□□□□ -2.06
SCFD1-221ENST00000556534 BLNKQ8WV28 456 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 HGDQ93099 445 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SMIM8Q96KF7 97 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 KLF13Q9Y2Y9 288 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-221ENST00000556534 TICRRQ7Z2Z1 1910 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 SCN4AP35499 1836 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 NPHP4O75161 1426 aaPredicted RBP2.16□□□□□ -2.06
SCFD1-221ENST00000556534 ABCB11O95342 1321 aa2.16□□□□□ -2.06
SCFD1-221ENST00000556534 NUP153P49790 1475 aaKnown RBP2.15□□□□□ -2.06
SCFD1-221ENST00000556534 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 LOC102724200A0A096LPH7 203 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 IGHV3-49A0A0A0MS15 119 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 RBFOX3A6NFN3 312 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 OR2AT4A6NND4 320 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 GATBO75879 557 aaKnown RBP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 ERFP50548 548 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 UBE2G2P60604 165 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 RPL10AP62906 217 aaKnown RBP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 BAXQ07812 192 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 FLOT2Q14254 428 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 TRIP13Q15645 432 aaPredicted RBP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 FAM9CQ8IZT9 166 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 SLC25A29Q8N8R3 303 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 IFT81Q8WYA0 676 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 BIRC8Q96P09 236 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 QKIQ96PU8 341 aaKnown RBP eCLIP2.15□□□□□ -2.072e-8■■■□□ 16.3
SCFD1-221ENST00000556534 HBEGFQ99075 208 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 TBL1YQ9BQ87 522 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 CHCHD7Q9BUK0 85 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 SRRQ9GZT4 340 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 ASB7Q9H672 318 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 SND1-IT1Q9HBX3 110 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 ABCB9Q9NP78 766 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 RBM12B-AS1Q9P1G2 102 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 PUS1Q9Y606 427 aaKnown RBP eCLIP2.15□□□□□ -2.07
SCFD1-221ENST00000556534 ERCC6L2Q5T890 1561 aa2.15□□□□□ -2.07
SCFD1-221ENST00000556534 CC2D2AQ9P2K1 1620 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TMEM72A0PK05 275 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TMEM213A2RRL7 107 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 FABP12A6NFH5 140 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 J3QLI3 93 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 FFAR1O14842 300 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TCAPO15273 167 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 AQP9O43315 295 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ZNF35P13682 527 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 IL1RNP18510 177 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 NELFEP18615 380 aaKnown RBP2.14□□□□□ -2.07
SCFD1-221ENST00000556534 COL8A2P25067 703 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TSPOP30536 169 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 RPA3P35244 121 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-221ENST00000556534 GCLMP48507 274 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ADIGQ0VDE8 80 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 COTL1Q14019 142 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ZNF404Q494X3 552 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 LUZP6Q538Z0 58 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ACTBL2Q562R1 376 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 CLLU1OSQ5K130 101 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TIMM23BQ5SRD1 257 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TPGS1Q6ZTW0 290 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 CRLF3Q8IUI8 442 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ZNF101Q8IZC7 436 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 OR5M1Q8NGP8 315 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ZNF420Q8TAQ5 688 aaPredicted RBP2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ACTL9Q8TC94 416 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 CCL17Q92583 94 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 LRRC45Q96CN5 670 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 WDR34Q96EX3 536 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 FMC1Q96HJ9 113 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 OR2M4Q96R27 311 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ZNF251Q9BRH9 671 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 MFSD1Q9H3U5 465 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 POMKQ9H5K3 350 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 METTL8Q9H825 291 aaKnown RBP2.14□□□□□ -2.07
SCFD1-221ENST00000556534 C21orf62Q9NYP8 219 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TAS2R13Q9NYV9 303 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TAS2R5Q9NYW4 299 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 DNAJC27Q9NZQ0 273 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 FBXL3Q9UKT7 428 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 SLC22A14Q9Y267 594 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ATP6V1DQ9Y5K8 247 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 TRIP11Q15643 1979 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 ELP1O95163 1332 aa2.14□□□□□ -2.07
SCFD1-221ENST00000556534 SHROOM3Q8TF72 1996 aa2.13□□□□□ -2.07
SCFD1-221ENST00000556534 IGHV3OR16-8A0A075B7F1 116 aa2.13□□□□□ -2.07
SCFD1-221ENST00000556534 A0A0G2JMP0 313 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms