RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PPP1R3CQ9UQK1 317 aa12.99□□□□□ -0.33
CUX1-215ENST00000556210 ABCA4P78363 2273 aa12.99□□□□□ -0.33
CUX1-215ENST00000556210 RNF222A6NCQ9 220 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 TUSC2O75896 110 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 IGHV3-13P01766 116 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 IGHV3-7P01780 117 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 MUC1P15941 1255 aaPredicted RBP12.98□□□□□ -0.33
CUX1-215ENST00000556210 MPLP40238 635 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 F2RL1P55085 397 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 TGIF1Q15583 401 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 AADACL3Q5VUY0 350 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 C17orf78Q8N4C9 275 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 NFAM1Q8NET5 270 aaPredicted RBP12.98□□□□□ -0.33
CUX1-215ENST00000556210 LPAR3Q9UBY5 353 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 PMS2CLQ68D20 193 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 ARHGEF39Q8N4T4 335 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 ZNF561Q8N587 486 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 RPS4Y2Q8TD47 263 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 OR10C1Q96KK4 312 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 SEC11CQ9BY50 192 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 AK3Q9UIJ7 227 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 UMAD1C9J7I0 102 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 SFT2D2O95562 160 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 NDUFA6P56556 154 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 TMEM50BP56557 158 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 ZXDAP98168 799 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 CLN3Q13286 438 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 OR1C1Q15619 314 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 GGNBP1Q5YKI7 109 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 LYZL2Q7Z4W2 148 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 PAQR4Q8N4S7 273 aaPredicted RBP12.98□□□□□ -0.33
CUX1-215ENST00000556210 FAM24BQ8N5W8 94 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 NRIP2Q9BQI9 281 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 FAM86C1Q9NVL1 165 aa12.98□□□□□ -0.33
CUX1-215ENST00000556210 DHRS7CA6NNS2 312 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 THBS4P35443 961 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 COL19A1Q14993 1142 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ATP1A1-AS1Q5TC04 95 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 OR2A2Q6IF42 318 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 OR13G1Q8NGZ3 307 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 NINJ1Q92982 152 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 SMCO3A2RU48 225 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 C1QL1O75973 258 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 RAC3P60763 192 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 KIAA0141Q14154 515 aaPredicted RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 PCOLCEQ15113 449 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 IGFBP7Q16270 282 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 C1orf100Q5SVJ3 147 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ZNF808Q8N4W9 903 aaPredicted RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 CLCC1Q96S66 551 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 CHCHD2Q9Y6H1 151 aaPredicted RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 EIF3GO75821 320 aaKnown RBP eCLIP12.97□□□□□ -0.33
CUX1-215ENST00000556210 JTBO76095 146 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 CD8AP01732 235 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 CA6P23280 308 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 STARD6P59095 220 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ZNF92Q03936 586 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ZP4Q12836 540 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ANKRD55Q3KP44 614 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ALKBH6Q3KRA9 238 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 PRSS54Q6PEW0 395 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ZSCAN4Q8NAM6 433 aaPredicted RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 ZFP62Q8NB50 900 aaPredicted RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 SCGB1C1Q8TD33 95 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 MSGN1A6NI15 193 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 SHISA7A6NL88 538 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 NXPH2O95156 264 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 ARG1P05089 322 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 FABP6P51161 128 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 NOVA1P51513 510 aaKnown RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 SRSF3P84103 164 aaKnown RBP12.97□□□□□ -0.33
CUX1-215ENST00000556210 EDDM3AQ14507 147 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 HAGHQ16775 308 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 PDZD11Q5EBL8 140 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 SLC25A47Q6Q0C1 308 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 C5orf24Q7Z6I8 188 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 SKA3Q8IX90 412 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 EXTL1Q92935 676 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 C5orf66Q9H5L9 145 aa12.97□□□□□ -0.33
CUX1-215ENST00000556210 A0A1B0GTI1 187 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 SERPINE3A8MV23 424 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 CELA3AP09093 270 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 TBPP20226 339 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 ZNF133P52736 654 aaPredicted RBP12.96□□□□□ -0.33
CUX1-215ENST00000556210 S100A12P80511 92 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 ASPHD2Q6ICH7 369 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 LILRB2Q8N423 598 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 ST8SIA3O43173 380 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 FPR2P25090 351 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 MIDNQ504T8 468 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 AKR1C8PQ5T2L2 129 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 CARFQ8N187 725 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 AQP3Q92482 292 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 FBXL17Q9UF56 701 aa12.96□□□□□ -0.33
CUX1-215ENST00000556210 IGHV1-45A0A0A0MS14 117 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 hCG_1809904A0A1W2PP81 198 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 A0A1W2PR64 198 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 A0A1W2PRV1 198 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 FSTP19883 344 aa12.96□□□□□ -0.34
CUX1-215ENST00000556210 CHATP28329 748 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms