RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 RPL31P62899 125 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 IRF3Q14653 427 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 TRAM1Q15629 374 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 TBCEQ15813 527 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 KLF17Q5JT82 389 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 DDI2Q5TDH0 399 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 CDH26Q8IXH8 852 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 CD177Q8N6Q3 437 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 UFD1Q92890 307 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 SNX22Q96L94 193 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 S100A13Q99584 98 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 METTL8Q9H825 291 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 UNKLQ9H9P5 680 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 HMG20AQ9NP66 347 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 EXOSC4Q9NPD3 245 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 ISYNA1Q9NPH2 558 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 RBFOX1Q9NWB1 397 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 IL36GQ9NZH8 169 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 FOXJ3Q9UPW0 622 aa11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 SIRT4Q9Y6E7 314 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-207ENST00000554051 ANK3Q12955 4377 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 FUOMA2VDF0 154 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 TRIM77I1YAP6 450 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 K7N7A8 449 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 SH2D1BO14796 132 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 SPRY1O43609 319 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 FCN3O75636 299 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 RBP4P02753 201 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 SELLP14151 372 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF93P35789 620 aaPredicted RBP11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 COL10A1Q03692 680 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 MED22Q15528 200 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 ELP2Q6IA86 826 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 GDPD3Q7L5L3 318 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 FAM185AQ8N0U4 392 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 ZFP41Q8N8Y5 198 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 OR5D18Q8NGL1 313 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 TNFAIP8L1Q8WVP5 186 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 TBX15Q96SF7 602 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 SLC6A7Q99884 636 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 FAM192AQ9GZU8 254 aa11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 LSM2Q9Y333 95 aaKnown RBP11.86□□□□□ -0.51
CCDC88C-207ENST00000554051 TRBV5-7A0A0A0MS05 114 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 MEGF11A6BM72 1044 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 RNF212BA8MTL3 300 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 GABRPO00591 440 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF737O75373 536 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 IGFBP3P17936 291 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 EEF1B2P24534 225 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 RANBP1P43487 201 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 RPS11P62280 158 aaKnown RBP eCLIP11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 ARF6P62330 175 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 MEF2CQ06413 473 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 MLLT11Q13015 90 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 DOC2BQ14184 412 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 GPR176Q14439 515 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 IL13RA2Q14627 380 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 RSU1Q15404 277 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 TUSC1Q2TAM9 212 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 VMO1Q7Z5L0 202 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 LINC00596Q86U02 117 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 PHYHIPQ92561 330 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 RFT1Q96AA3 541 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 DERL3Q96Q80 235 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 OR14A2Q96R54 314 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 CCDC90BQ9GZT6 254 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 NOX4Q9NPH5 578 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF69Q9UC07 566 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 ARHGAP32A7KAX9 2087 aa11.85□□□□□ -0.51
CCDC88C-207ENST00000554051 IGHV1-69DA0A0B4J2H0 117 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 hADV38S2A0JD32 116 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 CLDN34H7C241 214 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 MGST3O14880 152 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 DENRO43583 198 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 ANGPTL7O43827 346 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 IGHV1-69P01742 117 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 CSN2P05814 226 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 SFTPBP07988 381 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 IGHV4-38-2P0DP08 117 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 GABRR1P24046 479 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 NPBWR2P48146 333 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 ZNF367Q7RTV3 350 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 BATF2Q8N1L9 274 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 SVOPQ8N4V2 548 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 OR52N4Q8NGI2 321 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 OR51A2Q8NGJ7 313 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 OR13C5Q8NGS8 318 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 SPACA5Q96QH8 159 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 YTHDF1Q9BYJ9 559 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 METTL9Q9H1A3 318 aa11.84□□□□□ -0.51
CCDC88C-207ENST00000554051 IGKV1-12A0A0C4DH73 117 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 PNMA8CA0A1B0GUJ8 204 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 F8VVB4 439 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 F8VWA3 439 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 H3BUI4 141 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 INMTO95050 263 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 IGKV1D-12P01611 117 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 CSTBP04080 98 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 TFF1P04155 84 aa11.83□□□□□ -0.52
CCDC88C-207ENST00000554051 PRTN3P24158 256 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms