RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TTTY12Q9BZ98 90 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TMEM100Q9NV29 134 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TINAGQ9UJW2 476 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 WNK2Q9Y3S1 2297 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TRBV5-7A0A0A0MS05 114 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 RNF212BA8MTL3 300 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 JTBO76095 146 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 IFI6P09912 130 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 CTXN2P0C2S0 81 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SNCAP37840 140 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 DEFA6Q01524 100 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ZNF92Q03936 586 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SKA3Q8IX90 412 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 OR5B12Q96R08 314 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 GPR87Q9BY21 358 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SRXN1Q9BYN0 137 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 TREM2Q9NZC2 230 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ZNF629Q9UEG4 869 aaPredicted RBP13.13□□□□□ -0.31
CUX1-214ENST00000550008 IGHV3-43A0A0B4J1X8 118 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 MKRN2OSH3BPM6 223 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 IGHV3-43DP0DP04 118 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 UBE2KP61086 200 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 HBG1P69891 147 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 HBG2P69892 147 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ZFP82Q8N141 532 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 ST7LQ8TDW4 575 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 CHST5Q9GZS9 411 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 SLC39A9Q9NUM3 307 aa13.13□□□□□ -0.31
CUX1-214ENST00000550008 PURGQ9UJV8 347 aaKnown RBP13.13□□□□□ -0.31
CUX1-214ENST00000550008 RCL1Q9Y2P8 373 aaKnown RBP13.13□□□□□ -0.31
CUX1-214ENST00000550008 CDIPTO14735 213 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 SLC25A47Q6Q0C1 308 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 OR4A16Q8NH70 328 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 ZNF837Q96EG3 531 aaPredicted RBP13.12□□□□□ -0.31
CUX1-214ENST00000550008 LPAR5Q9H1C0 372 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 TIMM8BQ9Y5J9 83 aaPredicted RBP13.12□□□□□ -0.31
CUX1-214ENST00000550008 HELZP42694 1942 aaKnown RBP13.12□□□□□ -0.31
CUX1-214ENST00000550008 E5RGE8 158 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 MPPED1O15442 326 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 CHATP28329 748 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 FAM209AQ5JX71 171 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 ANGPTL6Q8NI99 470 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 HGDQ93099 445 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 PRRX2Q99811 253 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 G6PC2Q9NQR9 355 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 NSG2Q9Y328 171 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 A0A0G2JMM0 328 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 A0A1W2PPB8 328 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 A0A1W2PRS3 328 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 KIR3DP1A8MWS1 328 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 B4E171 279 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 TSPAN7P41732 249 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 EFNB1P98172 346 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 PRAMEF5Q5TYX0 476 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 PRAMEF6Q5VXH4 476 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 H2BFWTQ7Z2G1 175 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 OR1S2Q8NGQ3 325 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 GPHA2Q96T91 129 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 ATP23Q9Y6H3 246 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 CUL9Q8IWT3 2517 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 PLXND1Q9Y4D7 1925 aa13.12□□□□□ -0.31
CUX1-214ENST00000550008 S100PP25815 95 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 RBPJQ06330 500 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FAM27BQ5VT28 67 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 JMJD6Q6NYC1 403 aaPredicted RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 THNSL2Q86YJ6 484 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 NIT2Q9NQR4 276 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 DECR2Q9NUI1 292 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FAM206AQ9NX38 181 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 STARD10Q9Y365 291 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FAM96BQ9Y3D0 163 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 PMS2P1A4D2B8 440 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 C3orf80F5H4A9 247 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 GABRA1P14867 456 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 CPN1P15169 458 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 NKX6-1P78426 367 aaPredicted RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 LRRC75AQ8NAA5 344 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FOXJ2Q9P0K8 574 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 CFDP00746 253 aaPredicted RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 CELA3AP09093 270 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 CST2P09228 141 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 H2AFB1P0C5Y9 115 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 BCL3P20749 454 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FAM185AQ8N0U4 392 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 CHCHD2Q9Y6H1 151 aaPredicted RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 TRGV8A0A0C4DH27 118 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 H7C1Q1 480 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 TERTO14746 1132 aaKnown RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 SP1P08047 785 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 HOXA1P49639 335 aaPredicted RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 RAB31Q13636 194 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 KIAA2026Q5HYC2 2103 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 RPL7L1Q6DKI1 246 aaKnown RBP13.11□□□□□ -0.31
CUX1-214ENST00000550008 ADAM5Q6NVV9 412 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 OR14K1Q8NGZ2 314 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 RPS4Y2Q8TD47 263 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 FRZBQ92765 325 aa13.11□□□□□ -0.31
CUX1-214ENST00000550008 ZNF724A8MTY0 619 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 GPR31O00270 319 aa13.1□□□□□ -0.31
CUX1-214ENST00000550008 NGFP01138 241 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms