RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SELENOIQ9C0D9 397 aa13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.46□□□□□ -0.259e-6■□□□□ 9.4
PRPF40A-212ENST00000545856 RBFOX1Q9NWB1 397 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 RCC2Q9P258 522 aaKnown RBP13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 NLKQ9UBE8 527 aa13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 DNAJB11Q9UBS4 358 aa13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 PPIAL4AQ9Y536 164 aa13.46□□□□□ -0.25
PRPF40A-212ENST00000545856 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 SH2D1BO14796 132 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 XRCC3O43542 346 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 CA11O75493 328 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 LMO1P25800 156 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 GIFP27352 417 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 MDH2P40926 338 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 BTG1P62324 171 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 MRPS10P82664 201 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 PAX5Q02548 391 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 TMEM155Q4W5P6 130 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 SPANXN2Q5MJ10 180 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 SHEQ5VZ18 495 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 OR5H6Q8NGV6 325 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 PPP1R35Q8TAP8 253 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 FBN2P35556 2912 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 NBPF19A0A087WUL8 3843 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 A0A0B4J203 849 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 SERPINE3A8MV23 424 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 CTDSP2O14595 271 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 PITPNBP48739 271 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 PTH2RP49190 550 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 PDLIM4P50479 330 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 RBM39Q14498 530 aaKnown RBP13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 C11orf91Q3C1V1 193 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 SPRNQ5BIV9 151 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 OR10K1Q8NGX5 313 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 OR10R2Q8NGX6 335 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 FAM234AQ9H0X4 552 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 TREM2Q9NZC2 230 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 KAAG1Q9UBP8 84 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 WIPI2Q9Y4P8 454 aa13.45□□□□□ -0.26
PRPF40A-212ENST00000545856 NKX6-3A6NJ46 265 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 OR2AT4A6NND4 320 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 FOXI3A8MTJ6 420 aaPredicted RBP13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 FAM25AB3EWG3 89 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 FAM25CB3EWG5 89 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 FAM25GB3EWG6 89 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 RAB27BO00194 218 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 HPGDSO60760 199 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 PDCD6O75340 191 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 CYB5R3P00387 301 aaPredicted RBP13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 IGHV4-39P01824 125 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 GSTP1P09211 210 aaKnown RBP13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ELK1P19419 428 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 FUT3P21217 361 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ATP5J2P56134 94 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 PITPNAQ00169 270 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ZNF45Q02386 682 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 PNLIPRP3Q17RR3 467 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 STUMQ69YW2 141 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 OR10K2Q6IF99 312 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 CCDC190Q86UF4 302 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 LAX1Q8IWV1 398 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 CMTM4Q8IZR5 234 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ZNF561Q8N587 486 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 SPICQ8N5J4 248 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 YIPF5Q969M3 257 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 SDSLQ96GA7 329 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 DIRAS2Q96HU8 199 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 NEDD4LQ96PU5 975 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 NKX3-1Q99801 234 aaPredicted RBP13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ATG5Q9H1Y0 275 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 MIXL1Q9H2W2 232 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 ZNF222Q9UK12 451 aa13.44□□□□□ -0.26
PRPF40A-212ENST00000545856 DOCK11Q5JSL3 2073 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 A0A1W2PP11 408 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 F8VVB4 439 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 F8VWA3 439 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 H7C1Q1 480 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 OR7C1O76099 320 aaPredicted RBP13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 HAND1O96004 215 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 CSN2P05814 226 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 EGR1P18146 543 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 TNFSF8P32971 234 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 TMEM69Q5SWH9 247 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 PYHIN1Q6K0P9 492 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 PRSS57Q6UWY2 283 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 DCDC5Q6ZRR9 648 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 SLC36A1Q7Z2H8 476 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 ANGPTL6Q8NI99 470 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 RAB3CQ96E17 227 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 MED30Q96HR3 178 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 ZNF488Q96MN9 340 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 RIMS4Q9H426 269 aaPredicted RBP13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 BANF2Q9H503 90 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 ZNF665Q9H7R5 613 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 EXTL2Q9UBQ6 330 aa13.43□□□□□ -0.26
PRPF40A-212ENST00000545856 CREBBPQ92793 2442 aa13.42□□□□□ -0.26
PRPF40A-212ENST00000545856 ASH1LQ9NR48 2969 aaKnown RBP13.42□□□□□ -0.26
PRPF40A-212ENST00000545856 IGHV3-64DA0A0J9YX35 117 aa13.42□□□□□ -0.26
PRPF40A-212ENST00000545856 GEMIN2O14893 280 aaKnown RBP13.42□□□□□ -0.26
PRPF40A-212ENST00000545856 GPR37O15354 613 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms