RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 FAM215AQ9Y5M1 114 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PLSCR5A0PG75 271 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 H0YL77 283 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 TRAPPC2LH3BP13 241 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PGAM2P15259 253 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PPP3CBP16298 524 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PTGER4P35408 488 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 UCP2P55851 309 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 ARL6IP1Q15041 203 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 LHFPL1Q86WI0 220 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 TMEM17Q86X19 198 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 SPACA3Q8IXA5 215 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 MYOZ1Q9NP98 299 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-216ENST00000541410 PLSCR4Q9NRQ2 329 aa12.42□□□□□ -0.42
CLIP1-216ENST00000541410 IGF2RP11717 2491 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 C13orf42A0A1B0GVH6 325 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 EEF1E1-BLOC1S5C9J1V9 151 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 OR5H8P0DN80 308 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 COX5AP20674 150 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 FUT3P21217 361 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 NFYAP23511 347 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 CALCRP30988 508 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 FXYD4P59646 89 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 MRPL49Q13405 166 aaKnown RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 IKZF1Q13422 519 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 OR2A2Q6IF42 318 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 WDR86Q86TI4 376 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 NEK7Q8TDX7 302 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 TOMM40LQ969M1 308 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 MRPS24Q96EL2 167 aaKnown RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 PHB2Q99623 299 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 HS3ST1O14792 307 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 CFDP00746 253 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 IL2RAP01589 272 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 PSG7Q13046 419 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 ATXN7L3Q14CW9 347 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 INO80CQ6PI98 192 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 OR5M8Q8NGP6 311 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 MITD1Q8WV92 249 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 CHMP1AQ9HD42 196 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-216ENST00000541410 SH3BGRL2Q9UJC5 107 aa12.41□□□□□ -0.42
CLIP1-216ENST00000541410 MKRN2OSH3BPM6 223 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 KCNAB3O43448 404 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 ADAP1O75689 374 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 CGAP01215 116 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 CECR9P0C854 216 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 FGF12P61328 243 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 GNG3P63215 75 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 SUPT4H1P63272 117 aaKnown RBP12.4□□□□□ -0.42
CLIP1-216ENST00000541410 TMEM128Q5BJH2 165 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 CLEC18BQ6UXF7 455 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 MKXQ8IYA7 352 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 RDH5Q92781 318 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 WDR13Q9H1Z4 485 aa12.4□□□□□ -0.42
CLIP1-216ENST00000541410 TRAV14DV4A0A0A6YYC5 116 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 MPTX1A8MV57 137 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 L7N2F9 121 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 GLI4P10075 376 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 FPR2P25090 351 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 FABP6P51161 128 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 TEX261Q6UWH6 196 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 CISD2Q8N5K1 135 aaKnown RBP12.4□□□□□ -0.43
CLIP1-216ENST00000541410 KLF14Q8TD94 323 aaPredicted RBP12.4□□□□□ -0.43
CLIP1-216ENST00000541410 OPA3Q9H6K4 179 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 PCDHB16Q9NRJ7 776 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 TINAGQ9UJW2 476 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 MPC1Q9Y5U8 109 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 U3KQ87 197 aa12.4□□□□□ -0.43
CLIP1-216ENST00000541410 CHD3Q12873 2000 aaKnown RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 C5orf51A6NDU8 294 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 MBD3L4A6NDZ8 208 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 MBD3L3A6NE82 208 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 MBD3L5A6NJ08 208 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 MCRIP1C9JLW8 97 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 CA11O75493 328 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 DUS4LO95620 317 aaKnown RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 IGKV3-15P01624 115 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 GRPP07492 148 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 CBR1P16152 277 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 SEC61A1P61619 476 aaKnown RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 NHLH1Q02575 133 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 PPA1Q15181 289 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 IGSF11Q5DX21 431 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 C6orf183Q5T699 404 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 FBXW12Q6X9E4 464 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 MBD3L2Q8NHZ7 208 aaPredicted RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 RDH8Q9NYR8 311 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 SMG1Q96Q15 3661 aaKnown RBP12.39□□□□□ -0.43
CLIP1-216ENST00000541410 ADGRG4Q8IZF6 3080 aa12.39□□□□□ -0.43
CLIP1-216ENST00000541410 CDIPTO14735 213 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 GFRA3O60609 400 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 RGS11O94810 467 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 OPCMLQ14982 345 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ANKRD55Q3KP44 614 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF474Q6S9Z5 364 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-216ENST00000541410 BHLHA15Q7RTS1 189 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-216ENST00000541410 PEG10Q86TG7 708 aaKnown RBP12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ZNF680Q8NEM1 530 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 LILRB4Q8NHJ6 448 aa12.38□□□□□ -0.43
CLIP1-216ENST00000541410 ADAT1Q9BUB4 502 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms