RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 A0A1W2PRS3 328 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 C17orf102A2RUQ5 167 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 XRCC2O43543 280 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 LILRA1O75019 489 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 KBTBD11O94819 623 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 CNOT4O95628 575 aaKnown RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 CSNK2A1P68400 391 aaPredicted RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 SHBQ15464 509 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 PRAMEF20Q5VT98 475 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 C1orf140Q5VVS0 124 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 HSD11B1LQ7Z5J1 315 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 LRP11Q86VZ4 500 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 NIT1Q86X76 327 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 LGI3Q8N145 548 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 CSNK2A3Q8NEV1 391 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 OR4S2Q8NH73 311 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 SCARF2Q96GP6 870 aaPredicted RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 ABHD14BQ96IU4 210 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 HSPB9Q9BQS6 159 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 SLC46A2Q9BY10 475 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 SRA1Q9HD15 236 aaKnown RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 ZNF586Q9NXT0 402 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 NPIPA5A0A0B4J1W7 369 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 A0A1B0GV72 72 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 PROB1E7EW31 1015 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 CORTO00230 105 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 CDS2O95674 445 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 HPNP05981 417 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 H2BFMP0C1H6 154 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 FAHP16930 419 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 VIPR2P41587 438 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 GRK6P43250 576 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 PSEN2P49810 448 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 HYAL1Q12794 435 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 ZIC1Q15915 447 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 ZNF787Q6DD87 383 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 ABHD17CQ6PCB6 329 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 KLHL24Q6TFL4 600 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 Q6ZVL8 140 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 FAM3CQ92520 227 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 TSSK2Q96PF2 358 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 MRPL13Q9BYD1 178 aaKnown RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 ZNF703Q9H7S9 590 aaPredicted RBP10.88□□□□□ -0.67
USP3-203ENST00000538686 RBPJLQ9UBG7 517 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 HIF3AQ9Y2N7 669 aa10.88□□□□□ -0.67
USP3-203ENST00000538686 ZFP92A6NM28 416 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 ATXN7O15265 892 aaPredicted RBP10.87□□□□□ -0.67
USP3-203ENST00000538686 ERI3O43414 337 aaKnown RBP10.87□□□□□ -0.67
USP3-203ENST00000538686 OTX1P32242 354 aaPredicted RBP10.87□□□□□ -0.67
USP3-203ENST00000538686 MSMO1Q15800 293 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 PSG3Q16557 428 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 ZNF74Q16587 644 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 CDRT4Q8N9R6 151 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 MBD3L1Q8WWY6 194 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 STARD4Q96DR4 205 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 LINC00615Q96LM1 132 aaPredicted RBP10.87□□□□□ -0.67
USP3-203ENST00000538686 SMPXQ9UHP9 88 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 PPIAL4AQ9Y536 164 aa10.87□□□□□ -0.67
USP3-203ENST00000538686 NUMA1Q14980 2115 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 IGHV2-26A0A0B4J1V2 119 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 ZNF840PA6NDX5 716 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 AQP7P3A6NL99 342 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 C17orf105B2RV13 164 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 TMEM250H0YL14 139 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 IFNL4K9M1U5 179 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CDIPTO14735 213 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 RPS12P25398 132 aaKnown RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 GABRA3P34903 492 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 TAS2R30P59541 319 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 LCN6P62502 163 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 RPL23P62829 140 aaKnown RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 RBPJQ06330 500 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CXCL9Q07325 125 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 ARFRP1Q13795 201 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 LRRC10Q5BKY1 277 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 ERN2Q76MJ5 926 aaKnown RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 ZNF761Q86XN6 746 aaPredicted RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 ZNF519Q8TB69 540 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 LIPHQ8WWY8 451 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 PINX1Q96BK5 328 aaKnown RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 SLC46A1Q96NT5 459 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 ADOQ96SZ5 270 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 PTPN18Q99952 460 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 KLF16Q9BXK1 252 aaPredicted RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 DECR2Q9NUI1 292 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 RYDENQ9NUL5 291 aaKnown RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 ELOVL5Q9NYP7 299 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CXXC1Q9P0U4 656 aaPredicted RBP10.86□□□□□ -0.67
USP3-203ENST00000538686 CLEC4EQ9ULY5 219 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 GPR34Q9UPC5 381 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 LRP12Q9Y561 859 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 COL4A5P29400 1685 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 RAMP3O60896 148 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 VENTXO95231 258 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CSTAP01040 98 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 HLA-HP01893 362 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CTSBP07858 339 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 DBHP09172 617 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 CD99P14209 185 aa10.86□□□□□ -0.67
USP3-203ENST00000538686 TSPOP30536 169 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms