RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 COPS3Q9UNS2 423 aa11.13□□□□□ -0.63
SMARCA4-206ENST00000538456 PCDHGB5Q9Y5G0 923 aa11.13□□□□□ -0.63
SMARCA4-206ENST00000538456 EPPK1P58107 5090 aaKnown RBP11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 LOC110117498-PIK3R3F6TDL0 507 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 H0YHG0 523 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 H3BSH0 61 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 ZNF254O75437 659 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 HAND1O96004 215 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 NHLRC4P0CG21 123 aaPredicted RBP11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 ARHGDIBP52566 201 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 RPL23AP62750 156 aaKnown RBP11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 DGCR2P98153 550 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 ROM1Q03395 351 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 SNAPC1Q16533 368 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 C16orf89Q6UX73 402 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 UNQ9370/PRO34162Q6UXP9 181 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 ARHGAP24Q8N264 748 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 ABHD12Q8N2K0 398 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 OR52N4Q8NGI2 321 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 V9GYS6 101 aa11.12□□□□□ -0.63
SMARCA4-206ENST00000538456 MAGEB4O15481 346 aaPredicted RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 HMGN1P05114 100 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 PEX2P28328 305 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 DUSP1P28562 367 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 SNU13P55769 128 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 RAB25P57735 213 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 FAM98BQ52LJ0 330 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 TMEM236Q5W0B7 351 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 SLC25A26Q70HW3 274 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 OR2W3Q7Z3T1 314 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 EGFL6Q8IUX8 553 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 KLHL30-AS1Q8NEE0 82 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 OR14K1Q8NGZ2 314 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 ASB17Q8WXJ9 295 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 EMG1Q92979 244 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 UTP4Q969X6 686 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 DUX3Q96PT4 197 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 PAPOLBQ9NRJ5 636 aaKnown RBP11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 DNAJB9Q9UBS3 223 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 TENM2Q9NT68 2774 aa11.11□□□□□ -0.63
SMARCA4-206ENST00000538456 IGKV1-27A0A075B6S5 117 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 A0A1B0GTI1 187 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 CCDC182A6NF36 153 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 LEUTXA8MZ59 168 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 PSPNO60542 156 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 SRSF10O75494 262 aaKnown RBP11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 CALCBP10092 127 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 CDK2P24941 298 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 BDH1Q02338 343 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 ODF4Q2M2E3 257 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 SPATS1Q496A3 300 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 NKAPLQ5M9Q1 402 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 SLX4IPQ5VYV7 408 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 ELMOD2Q8IZ81 293 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 ZNF596Q8TC21 504 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 NOL4LQ96MY1 436 aaPredicted RBP11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 ASCL2Q99929 193 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 APOL4Q9BPW4 351 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 MOB1AQ9H8S9 216 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 PLEKHA1Q9HB21 404 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 OR52A1Q9UKL2 312 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 SLC7A11Q9UPY5 501 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 TMEM14AQ9Y6G1 99 aa11.1□□□□□ -0.63
SMARCA4-206ENST00000538456 DYNC2H1Q8NCM8 4307 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 ARRDC5A6NEK1 342 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 C3orf84H3BNL1 204 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 M0QZK8 103 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 CST1P01037 141 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 OSMP13725 252 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 OR3A4PP47883 348 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 LUMP51884 338 aaPredicted RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 P2RX3P56373 397 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 CXCR4P61073 352 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 CDK5Q00535 292 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 RBM39Q14498 530 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 TPTE2P1Q5T6R2 138 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 ZNF322Q6U7Q0 402 aaPredicted RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 TMEM179BQ7Z7N9 219 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 DHFR2Q86XF0 187 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 PRR25Q96S07 402 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 CNN2Q99439 309 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 GAL3ST2Q9H3Q3 398 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 ZNF556Q9HAH1 456 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 ZNF286AQ9HBT8 521 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 RBFOX1Q9NWB1 397 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 ZMAT5Q9UDW3 170 aaKnown RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 LINC00527Q9UJ94 153 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 HHLA2Q9UM44 414 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 UBE2J1Q9Y385 318 aaPredicted RBP11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 MOB4Q9Y3A3 225 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 R4GMQ9 66 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 HSPE1-MOB4S4R3N1 261 aa11.09□□□□□ -0.63
SMARCA4-206ENST00000538456 TRGV10A0A0A0MS01 117 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 SIRPB1O00241 398 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 MGST3O14880 152 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 IGLV1-47P01700 117 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 GDNFP39905 211 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 CEACAM3P40198 252 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 MYCNOSP40205 109 aa11.08□□□□□ -0.64
SMARCA4-206ENST00000538456 OR3A1P47881 315 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms