RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ESM1Q9NQ30 184 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 C19orf12Q9NSK7 152 aa10.67□□□□□ -0.7
VPS28-216ENST00000533806 TRAV8-7A0A075B6U6 113 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 IGHV3OR16-10A0A075B7F0 116 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 TRAV40A0A0B4J280 105 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 GABRPO00591 440 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 PIN1P1O15428 100 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 INMTO95050 263 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 NDUFB7P17568 137 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 FSTP19883 344 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 LMO1P25800 156 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 GP2P55259 537 aaKnown RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 PDCD1Q15116 288 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 SPHARQ15513 63 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 SPIN3Q5JUX0 258 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 METTL11BQ5VVY1 283 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 TMEM200BQ69YZ2 307 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 METAP1DQ6UB28 335 aaPredicted RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 UNQ9370/PRO34162Q6UXP9 181 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 LYPD6Q86Y78 171 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 ZDHHC22Q8N966 263 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 PXT1Q8NFP0 134 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 OR5D18Q8NGL1 313 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 ZNF418Q8TF45 676 aaPredicted RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 ZFAND2BQ8WV99 257 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 TMEM158Q8WZ71 300 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 H1FXQ92522 213 aaKnown RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 EMG1Q92979 244 aaKnown RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 C1orf147Q96MC9 270 aaPredicted RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 SUCNR1Q9BXA5 334 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 TMEM138Q9NPI0 162 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 OR14J1Q9UGF5 321 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 RRP15Q9Y3B9 282 aaKnown RBP10.66□□□□□ -0.7
VPS28-216ENST00000533806 TENM1Q9UKZ4 2725 aa10.66□□□□□ -0.7
VPS28-216ENST00000533806 M0R1W7 72 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 DENRO43583 198 aaKnown RBP10.65□□□□□ -0.7
VPS28-216ENST00000533806 RGS10O43665 173 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 PSPNO60542 156 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 SC5DO75845 299 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 HAND1O96004 215 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 CYB5AP00167 134 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 HCKP08631 526 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 OCMP0CE72 109 aaPredicted RBP10.65□□□□□ -0.7
VPS28-216ENST00000533806 CALCBP10092 127 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 GPR50Q13585 617 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 RBM48Q5RL73 367 aaKnown RBP10.65□□□□□ -0.7
VPS28-216ENST00000533806 ELP2Q6IA86 826 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 BRD3OSQ6XYD6 125 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 PRSS48Q7RTY5 328 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 VMO1Q7Z5L0 202 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 OR8H2Q8N162 312 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 BPIFB2Q8N4F0 458 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 SIGLECL1Q8N7X8 197 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 SNX22Q96L94 193 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 CNBD2Q96M20 576 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 DERL3Q96Q80 235 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 OR14A2Q96R54 314 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 ZNF184Q99676 751 aaPredicted RBP10.65□□□□□ -0.7
VPS28-216ENST00000533806 ONECUT1Q9UBC0 465 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 ANK2Q01484 3957 aa10.65□□□□□ -0.7
VPS28-216ENST00000533806 IGHV1-69DA0A0B4J2H0 117 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PNMA8CA0A1B0GUJ8 204 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 MAGEA13PA6NCF6 341 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 RNF212BA8MTL3 300 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 RGS9O75916 674 aaPredicted RBP10.64□□□□□ -0.71
VPS28-216ENST00000533806 IGHV1-69P01742 117 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 TMEM225BP0DP42 221 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PRKACAP17612 351 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PRTN3P24158 256 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 DUSP1P28562 367 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 BDKRB2P30411 391 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 TGFBR2P37173 567 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PTGFRP43088 359 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 DLX6P56179 175 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 RPL31P62899 125 aaKnown RBP10.64□□□□□ -0.71
VPS28-216ENST00000533806 TPBGQ13641 420 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 GPR157Q5UAW9 335 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 HCP5Q6MZN7 132 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 Q6P435 159 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PHC2Q8IXK0 858 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 CMTM4Q8IZR5 234 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 PIP4P2Q8N4L2 257 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 MS4A15Q8N5U1 240 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 OR4M1Q8NGD0 313 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 OR51T1Q8NGJ9 327 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 MS4A7Q9GZW8 240 aaPredicted RBP10.64□□□□□ -0.71
VPS28-216ENST00000533806 ISYNA1Q9NPH2 558 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 FOXJ3Q9UPW0 622 aa10.64□□□□□ -0.71
VPS28-216ENST00000533806 A0A1W2PPK0 400 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 RNASEK-C17orf49H0YIS7 233 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 SH2D1BO14796 132 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 MAGEB3O15480 346 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 OR2H2O95918 312 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 CD37P11049 281 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 OR3A1P47881 315 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 OR3A4PP47883 348 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 CAPZA1P52907 286 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 DLX1P56177 255 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 PPP3R1P63098 170 aa10.63□□□□□ -0.71
VPS28-216ENST00000533806 INSL4Q14641 139 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms