RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 POU3F4P49335 361 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 BDH1Q02338 343 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 IRF3Q14653 427 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 YIF1BQ5BJH7 314 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF529Q6P280 563 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 MKXQ8IYA7 352 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 LY6G5BQ8NDX9 201 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 OR6Q1Q8NGQ2 317 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 C8orf46Q8TAG6 207 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 GHSRQ92847 366 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 TMEM106AQ96A25 262 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 SLAMF9Q96A28 289 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 MMP27Q9H306 513 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 CCDC59Q9P031 241 aaKnown RBP12.44□□□□□ -0.42
CPSF1-208ENST00000532560 MAB21L2Q9Y586 359 aa12.44□□□□□ -0.42
CPSF1-208ENST00000532560 TRBV5-5A0A0J9YX44 114 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CYB5AP00167 134 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 MMP9P14780 707 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CD40LGP29965 261 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 SOX2P48431 317 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 FGF12P61328 243 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 PDZK1IP1Q13113 114 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 KLF17Q5JT82 389 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-208ENST00000532560 ASPHD2Q6ICH7 369 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CRIP3Q6Q6R5 217 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 BATF2Q8N1L9 274 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF561Q8N587 486 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CD177Q8N6Q3 437 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 ZFP41Q8N8Y5 198 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 TMEM185AQ8NFB2 350 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CPNE2Q96FN4 548 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-208ENST00000532560 DCTN5Q9BTE1 182 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 MND1Q9BWT6 205 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 NUP50Q9UKX7 468 aa12.43□□□□□ -0.42
CPSF1-208ENST00000532560 CUBNO60494 3623 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 A0A0A6YYJ9 748 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 TRAV40A0A0B4J280 105 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 F8VVB4 439 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 F8VWA3 439 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 TCF21O43680 179 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 AIREO43918 545 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 CD1AP06126 327 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 HCKP08631 526 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 RAB3AP20336 220 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 PRDX2P32119 198 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 RPS11P62280 158 aaKnown RBP eCLIP12.42□□□□□ -0.42
CPSF1-208ENST00000532560 ACSM1Q08AH1 577 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 DOC2BQ14184 412 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 GDPGP1Q6ZNW5 385 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 SAXO1Q8IYX7 474 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 KIR3DL3Q8N743 410 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 ZNRF1Q8ND25 227 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 OR13C5Q8NGS8 318 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 EMG1Q92979 244 aaKnown RBP12.42□□□□□ -0.42
CPSF1-208ENST00000532560 RFT1Q96AA3 541 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 SPACA5Q96QH8 159 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 SIRPDQ9H106 197 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 CNTD2Q9H8S5 307 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 SEBOXQ9HB31 216 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-208ENST00000532560 TAS2R4Q9NYW5 299 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 LSM2Q9Y333 95 aaKnown RBP12.42□□□□□ -0.42
CPSF1-208ENST00000532560 KPTNQ9Y664 436 aa12.42□□□□□ -0.42
CPSF1-208ENST00000532560 TRBV23-1A0A0A0MS06 115 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 SPRY1O43609 319 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 TOX4O94842 621 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 KDM4BO94953 1096 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 NDUFB7P17568 137 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 CELP19835 753 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 BCL3P20749 454 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 CEBPDP49716 269 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 ZP1P60852 638 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 KISS1Q15726 138 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 TUSC1Q2TAM9 212 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 Q499Y3 187 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 METTL11BQ5VVY1 283 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 FIP1L1Q6UN15 594 aaKnown RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 RNF144BQ7Z419 303 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 FAM58AQ8N1B3 248 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 CENPSQ8N2Z9 138 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 ZSCAN4Q8NAM6 433 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 OR51A2Q8NGJ7 313 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 ZNF418Q8TF45 676 aaPredicted RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 H1FXQ92522 213 aaKnown RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 WDFY2Q96P53 400 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 NXF2Q9GZY0 626 aaKnown RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 RHOFQ9HBH0 211 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 RBFOX1Q9NWB1 397 aaKnown RBP12.41□□□□□ -0.42
CPSF1-208ENST00000532560 OR14J1Q9UGF5 321 aa12.41□□□□□ -0.42
CPSF1-208ENST00000532560 ATRQ13535 2644 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 IGKV1-12A0A0C4DH73 117 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 IGKV1D-12P01611 117 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 SFTPBP07988 381 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 IGHV4-38-2P0DP08 117 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 FSTP19883 344 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 FPR2P25090 351 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 RANBP1P43487 201 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 NPBWR2P48146 333 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 CAPZA1P52907 286 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 PPP3R1P63098 170 aa12.4□□□□□ -0.42
CPSF1-208ENST00000532560 SPIN3Q5JUX0 258 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 213.7 ms